Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16c06
(777 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537565-1|CAD97783.1| 461|Homo sapiens hypothetical protein pr... 51 4e-06
BC068556-1|AAH68556.1| 461|Homo sapiens solute carrier family 4... 51 4e-06
BC060850-1|AAH60850.1| 463|Homo sapiens SLC46A3 protein protein. 51 4e-06
BC036662-1|AAH36662.1| 461|Homo sapiens solute carrier family 4... 51 4e-06
AL359454-3|CAM24029.1| 461|Homo sapiens novel protein protein. 51 4e-06
AL359454-2|CAI17158.1| 463|Homo sapiens novel protein protein. 51 4e-06
BC048285-1|AAH48285.1| 475|Homo sapiens solute carrier family 4... 49 2e-05
AL139041-1|CAI95196.1| 475|Homo sapiens thymic stromal co-trans... 49 2e-05
AF242557-1|AAK28343.1| 475|Homo sapiens thymic stromal co-trans... 49 2e-05
AK055571-1|BAB70960.1| 475|Homo sapiens protein ( Homo sapiens ... 47 7e-05
>BX537565-1|CAD97783.1| 461|Homo sapiens hypothetical protein
protein.
Length = 461
Score = 51.2 bits (117), Expect = 4e-06
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = -2
Query: 734 FVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAALVFDPTY 555
F T M+ + + ++ LRS+ SK++ S E G + + + +ETL + T+
Sbjct: 344 FASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTF 403
Query: 554 STIYARTVSVFTGAVYLYSS-LMSIPAIAI 468
+ IY+ TV+ + G +L S+ L+ +PAI++
Sbjct: 404 NGIYSATVAWYPGFTFLLSAGLLLLPAISL 433
>BC068556-1|AAH68556.1| 461|Homo sapiens solute carrier family 46,
member 3 protein.
Length = 461
Score = 51.2 bits (117), Expect = 4e-06
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = -2
Query: 734 FVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAALVFDPTY 555
F T M+ + + ++ LRS+ SK++ S E G + + + +ETL + T+
Sbjct: 344 FASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTF 403
Query: 554 STIYARTVSVFTGAVYLYSS-LMSIPAIAI 468
+ IY+ TV+ + G +L S+ L+ +PAI++
Sbjct: 404 NGIYSATVAWYPGFTFLLSAGLLLLPAISL 433
>BC060850-1|AAH60850.1| 463|Homo sapiens SLC46A3 protein protein.
Length = 463
Score = 51.2 bits (117), Expect = 4e-06
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = -2
Query: 734 FVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAALVFDPTY 555
F T M+ + + ++ LRS+ SK++ S E G + + + +ETL + T+
Sbjct: 344 FASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTF 403
Query: 554 STIYARTVSVFTGAVYLYSS-LMSIPAIAI 468
+ IY+ TV+ + G +L S+ L+ +PAI++
Sbjct: 404 NGIYSATVAWYPGFTFLLSAGLLLLPAISL 433
>BC036662-1|AAH36662.1| 461|Homo sapiens solute carrier family 46,
member 3 protein.
Length = 461
Score = 51.2 bits (117), Expect = 4e-06
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = -2
Query: 734 FVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAALVFDPTY 555
F T M+ + + ++ LRS+ SK++ S E G + + + +ETL + T+
Sbjct: 344 FASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTF 403
Query: 554 STIYARTVSVFTGAVYLYSS-LMSIPAIAI 468
+ IY+ TV+ + G +L S+ L+ +PAI++
Sbjct: 404 NGIYSATVAWYPGFTFLLSAGLLLLPAISL 433
>AL359454-3|CAM24029.1| 461|Homo sapiens novel protein protein.
Length = 461
Score = 51.2 bits (117), Expect = 4e-06
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = -2
Query: 734 FVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAALVFDPTY 555
F T M+ + + ++ LRS+ SK++ S E G + + + +ETL + T+
Sbjct: 344 FASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTF 403
Query: 554 STIYARTVSVFTGAVYLYSS-LMSIPAIAI 468
+ IY+ TV+ + G +L S+ L+ +PAI++
Sbjct: 404 NGIYSATVAWYPGFTFLLSAGLLLLPAISL 433
>AL359454-2|CAI17158.1| 463|Homo sapiens novel protein protein.
Length = 463
Score = 51.2 bits (117), Expect = 4e-06
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = -2
Query: 734 FVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAALVFDPTY 555
F T M+ + + ++ LRS+ SK++ S E G + + + +ETL + T+
Sbjct: 344 FASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTF 403
Query: 554 STIYARTVSVFTGAVYLYSS-LMSIPAIAI 468
+ IY+ TV+ + G +L S+ L+ +PAI++
Sbjct: 404 NGIYSATVAWYPGFTFLLSAGLLLLPAISL 433
>BC048285-1|AAH48285.1| 475|Homo sapiens solute carrier family 46,
member 2 protein.
Length = 475
Score = 48.8 bits (111), Expect = 2e-05
Identities = 27/92 (29%), Positives = 44/92 (47%)
Frame = -2
Query: 749 SISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAALV 570
++ + FV+ + Y V + T++RS SKLI GK+ + L L +V
Sbjct: 362 ALLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTGVV 421
Query: 569 FDPTYSTIYARTVSVFTGAVYLYSSLMSIPAI 474
Y+ IY T+ +F G+ + SS +S AI
Sbjct: 422 TSTLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453
>AL139041-1|CAI95196.1| 475|Homo sapiens thymic stromal
co-transporter protein.
Length = 475
Score = 48.8 bits (111), Expect = 2e-05
Identities = 27/92 (29%), Positives = 44/92 (47%)
Frame = -2
Query: 749 SISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAALV 570
++ + FV+ + Y V + T++RS SKLI GK+ + L L +V
Sbjct: 362 ALLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTGVV 421
Query: 569 FDPTYSTIYARTVSVFTGAVYLYSSLMSIPAI 474
Y+ IY T+ +F G+ + SS +S AI
Sbjct: 422 TSTLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453
>AF242557-1|AAK28343.1| 475|Homo sapiens thymic stromal
co-transporter protein.
Length = 475
Score = 48.8 bits (111), Expect = 2e-05
Identities = 27/92 (29%), Positives = 44/92 (47%)
Frame = -2
Query: 749 SISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAALV 570
++ + FV+ + Y V + T++RS SKLI GK+ + L L +V
Sbjct: 362 ALLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTGVV 421
Query: 569 FDPTYSTIYARTVSVFTGAVYLYSSLMSIPAI 474
Y+ IY T+ +F G+ + SS +S AI
Sbjct: 422 TSTLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453
>AK055571-1|BAB70960.1| 475|Homo sapiens protein ( Homo sapiens
cDNA FLJ31009 fis, clone HLUNG2000142, moderately
similar to Mus musculus putative thymic stromal
co-transporter TSCOT mRNA. ).
Length = 475
Score = 47.2 bits (107), Expect = 7e-05
Identities = 26/92 (28%), Positives = 43/92 (46%)
Frame = -2
Query: 749 SISMIFVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAALV 570
++ + FV+ + Y + T++RS SKLI GK+ + L L +V
Sbjct: 362 ALLLAFVKETYMFYIARAAMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSLALTGVV 421
Query: 569 FDPTYSTIYARTVSVFTGAVYLYSSLMSIPAI 474
Y+ IY T+ +F G+ + SS +S AI
Sbjct: 422 TSTLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,308,147
Number of Sequences: 237096
Number of extensions: 2016013
Number of successful extensions: 2594
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2594
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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