Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c06
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical ...    62   6e-10
Z82056-5|CAB04856.1|  378|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z81129-9|CAB03410.1|  378|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z70270-2|CAA94228.1|  445|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF003137-9|AAB93646.3|  883|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical
           protein Y4C6B.5 protein.
          Length = 469

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 29/90 (32%), Positives = 51/90 (56%)
 Frame = -2

Query: 734 FVQTDFQMYTIPIVEILNATTYTSLRSLASKLIPSEEMGKMNSLFSLVETLAALVFDPTY 555
           F+Q +   Y+I ++ + N    T  R+  S LI  +E GK+ S+ SL+E +  LV    Y
Sbjct: 343 FLQNEVMAYSIAVIVMFNRFVSTGFRAFISSLIDMQEQGKIFSVISLLEGITTLVATSIY 402

Query: 554 STIYARTVSVFTGAVYLYSSLMSIPAIAIL 465
           + +Y  T++ F G +YL S++  +  +AI+
Sbjct: 403 NNVYPNTLTFFPGLLYLISAVTLLIPLAIV 432


>Z82056-5|CAB04856.1|  378|Caenorhabditis elegans Hypothetical
           protein T26H5.5 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 557 YSTIYARTVSVFTGAVYLYSSLMSIPAIAILLWIFIKHRLELR 429
           YSTI    +S FTG +  Y S+    A+AI+  + IK+ L  R
Sbjct: 109 YSTILFALISGFTGKLVEYLSIWLAVAMAIIRSLVIKYPLNSR 151


>Z81129-9|CAB03410.1|  378|Caenorhabditis elegans Hypothetical
           protein T26H5.5 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 557 YSTIYARTVSVFTGAVYLYSSLMSIPAIAILLWIFIKHRLELR 429
           YSTI    +S FTG +  Y S+    A+AI+  + IK+ L  R
Sbjct: 109 YSTILFALISGFTGKLVEYLSIWLAVAMAIIRSLVIKYPLNSR 151


>Z70270-2|CAA94228.1|  445|Caenorhabditis elegans Hypothetical
           protein C53D6.3 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -2

Query: 656 SLASKLIPSEEMGKMNSLFSLVETLAALVFD-PTYSTIYARTVSVFTGAVYLYSSLMSIP 480
           SL S+ IP+  M  +NSL ++V +   ++ + P  S I    V +     +++ SL+ + 
Sbjct: 282 SLGSRAIPARTMLGVNSLLAIVFSFGNIMRNLPRVSYIKGIDVWMLVSMTFIFCSLLELA 341

Query: 479 AIAILL 462
            +  ++
Sbjct: 342 IVGFMV 347


>AF003137-9|AAB93646.3|  883|Caenorhabditis elegans Hypothetical
           protein C27A12.9 protein.
          Length = 883

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = -2

Query: 581 AALVFDPTYSTIYARTVSVFTGAVYLYSSLMSIPAIAILLWIFIKHRLELR 429
           AAL+ D T S   ART+ + T AV   SS++S+   A+ + I IK  L  +
Sbjct: 428 AALLTDKTDSDGSARTLLLMTLAVSCLSSIISMCHKALQIRISIKSMLSAK 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,466,821
Number of Sequences: 27780
Number of extensions: 336265
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)