Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16c02
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   244   9e-66

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  244 bits (598), Expect = 9e-66
 Identities = 122/229 (53%), Positives = 154/229 (67%), Gaps = 1/229 (0%)
 Frame = -2

Query: 823 GGGDPILYQHLF*FFGHPEVYILILPGLGIISHIISQERGKKETFXXXXXXXXXXXXXXX 644
           GGGDP+LYQHLF FFGHPEVYILI+P  G++SHII      K  F               
Sbjct: 231 GGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHIIPS-LAHKPIFGKEGMLWAMLSIALL 289

Query: 643 GFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP-NIL*RL 467
           G +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +
Sbjct: 290 GLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAI 349

Query: 466 GFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTG 287
           GF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   G
Sbjct: 350 GFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFG 408

Query: 286 LSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*N 140
           L  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP++++  N
Sbjct: 409 LMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPEAFVGWN 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,915
Number of Sequences: 5004
Number of extensions: 43069
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)