Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16c01
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 36 0.005
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 32 0.081
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 29 0.76
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 29 1.0
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 28 1.8
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 28 1.8
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 3.1
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 4.0
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 4.0
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 5.4
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 5.4
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 5.4
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 26 7.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.1
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|... 26 7.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 7.1
SPBPJ4664.03 |mfm3||M-factor precursor Mfm3|Schizosaccharomyces ... 25 9.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.4
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQKCSICGG-EHLYKECDKPTE-ICCTNCSGP-HLAISKVCP 472
C+ C + H A+ C KC CG H EC + ++ C C+ P H+A++ P
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCTSP 175
Score = 29.5 bits (63), Expect = 0.57
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +2
Query: 296 PLQQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKP-TEICCTNC-SGPHLAISKV 466
P +C+ C + H A+ C C C H EC +P E C C + HL +
Sbjct: 15 PGPRCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV--RD 72
Query: 467 CP 472
CP
Sbjct: 73 CP 74
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 32.3 bits (70), Expect = 0.081
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSK-----QKCSIC-GGEHLYKECDK------PTEICCTNCSGPHL 451
CF+C HS C+ K KC IC HL +C++ P CC CS H
Sbjct: 102 CFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVH- 160
Query: 452 AISKVC 469
++K C
Sbjct: 161 HLAKDC 166
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 29.1 bits (62), Expect = 0.76
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = +2
Query: 524 ATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTHVDNVNKQQDLL 703
ATST+ N D P +S Y+T S + S + +Y ++NK ++T ++ K D +
Sbjct: 425 ATSTRSFN--DISPSSSSS---YSTAQISTFPSNQESIYKNINKRLST-LEERKKAFDEI 478
Query: 704 PLENIKNQIVSNNDVLMALVQTLVELGN 787
+E I +N M Q L EL +
Sbjct: 479 -VEKILTNYGKHNAKNMNFTQLLHELNS 505
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVN--KPLYNSVNKPVNTHVDNVN 685
T T + + +SV N ++ KPL N++NK VN DN+N
Sbjct: 450 TDFTAIVKSYFESVDNPLDIPKPLTNTINKFVNQSKDNLN 489
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = +2
Query: 293 PPLQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEICCTNCSGP 445
PPL F C NH + S K S G H K C + + T S P
Sbjct: 17 PPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHC-KICGQSHQCLITALSAP 66
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 548 NNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTHVDNVNKQQDLLP-LENIKN 724
N DFP PT+ +P ++ N SV + P + P+ + ++ + P L+N+K+
Sbjct: 86 NQDFPSNPTAHSP-SSSSNDSVITATGVPDGILRDSPIVSALEPPSSNSSSSPQLQNLKH 144
Query: 725 QIVS 736
Q+ S
Sbjct: 145 QLSS 148
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 106 VSWNESYYSSLFNLRSRNES 47
V WN + Y L NL+S N S
Sbjct: 381 VHWNSTVYQELLNLKSNNSS 400
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 533 TKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTHVDNV 682
T Q+ N+ L + V N VN S++ + N+P S+N ++ DNV
Sbjct: 447 TLQLQNSPLSKLVPQE--VGNKVNDSIHTTSNQPSKFSLNPSISLKGDNV 494
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +2
Query: 599 VNKSVYNSVNKPLYNSVN-----KPVNTHVDNVNKQQDLLPLENIKNQIVS 736
+ K+ N L+ S+N +PV D + L P++N KN++VS
Sbjct: 827 ITKTSLNREKPALHGSINLKHSTRPVVPIADGIYASTTLHPIDNAKNRLVS 877
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 5.4
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +2
Query: 107 ISNKELYSRLSSIYEIIAIRRFTKKVGHEHVPLQTVSITF-----LSNILPDNVQYDLFS 271
I+ L SRL SI +RR T G TVS++F +++++P+ + +L
Sbjct: 81 ITINHLVSRLPSIVLPFLVRRLTTIAGRLDRFRSTVSVSFDCLNWVNSMIPNLPEKEL-Q 139
Query: 272 YRVFEYIPPLQQCF 313
Y + E + PLQ F
Sbjct: 140 YWILELL-PLQSSF 152
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/54 (22%), Positives = 25/54 (46%)
Frame = -1
Query: 687 LFTLSTCVFTGLFTELYRGLFTELYTDLFTVLYTGVFDVGSGGKSLLFTCLVEV 526
LF + G+F EL+ + ++ F L++ + K +L +C V++
Sbjct: 1684 LFRKIIALIIGVFAELHNSMAEFVHQKTFFRLFSSILSELDDAKDVLESCFVDI 1737
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 566 LPTSKTPVYNTVNKSVYNSVNKPLYNSVNKPVN--THVDNVNKQQDLLPLEN 715
L TSK V+ T + + N+P + S+N P T N Q DL P N
Sbjct: 297 LSTSKPEVHETEGYCPHKTGNRPGFPSLNIPRTRPTTAGIANTQFDLEPYRN 348
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 684 FTLSTCVFTGLFTELY 637
FTLS C+F GLF+ +
Sbjct: 193 FTLSRCIFQGLFSTFF 208
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 524 ATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKP 634
+TST + PP S TPV TV + +S + P
Sbjct: 334 STSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTP 370
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 527 TSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKP 634
TST + PP S TPV TV + +S + P
Sbjct: 281 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTP 316
>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -2
Query: 437 CNLYNKFQWACHIPCISAHLHK*NIFVYCY 348
C++ F W+C +PC N F+ Y
Sbjct: 89 CSVMCHFAWSCALPCFVDSFFPSNFFLRTY 118
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +2
Query: 560 PPLPTSKTP---VYNTVNKS-VYNSVNKPLYNSVNKPVNTHVDNVNKQQDLLPLENI 718
PP+P+ + P + +S S PL+ S KP + V+ Q+ P+EN+
Sbjct: 270 PPIPSPRPPQPVAVEAIQQSRAVISQQLPLHVSPRKPPKPPLRKVSTQRSSSPIENL 326
>SPBPJ4664.03 |mfm3||M-factor precursor Mfm3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 41
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 593 NTVNKSVYNSVNKPLYNSVNKPVNTHVDNV 682
NTV+ SV N+ NKP ++NK V + V
Sbjct: 6 NTVSSSVVNTGNKP-SETLNKTVKNYTPKV 34
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 512 TYASATSTKQVNNNDFPPLPTSKTPVYNTVNK 607
T ++ TS+ ++ D PP P+S + Y N+
Sbjct: 291 TRSTGTSSSMAHSYDSPPSPSSPSDAYGDPNQ 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,843
Number of Sequences: 5004
Number of extensions: 60693
Number of successful extensions: 261
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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