Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16c01
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600 32 0.60
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123... 31 1.0
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 30 1.8
04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420 30 1.8
02_04_0650 + 24728700-24728725,24729582-24729660,24729802-247298... 30 1.8
01_01_0833 - 6517489-6517503,6517762-6517827,6517938-6518006,651... 30 2.4
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 29 3.2
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 29 4.2
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 29 5.6
11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169... 28 7.4
05_01_0119 + 820566-820739,822708-822737,823153-823266,823341-82... 28 7.4
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 28 9.7
>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
Length = 585
Score = 31.9 bits (69), Expect = 0.60
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQKCSICGGE-HLYKEC 403
CF+C H + C+SK C IC E H+ C
Sbjct: 274 CFRCLTKGHIMQDCSSKFYCEICESEDHIATRC 306
>01_06_0433 -
29311749-29311859,29311958-29312116,29312208-29312315,
29312449-29312531,29312617-29312786,29312833-29312903,
29313170-29313302,29313483-29313749,29313865-29313969,
29314053-29314144,29314263-29314363,29314426-29314552,
29315025-29315140,29315222-29315291,29315476-29315685
Length = 640
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +2
Query: 68 IEKTGIIRFV--PANISNKELYSRLSSIYEIIAIRRFTKKVGHEHVPLQTVSITFLSNIL 241
I KT +R+V ++ + Y+R+ + I+ + G E ++ L N++
Sbjct: 356 ITKTEALRYVLTAVYLAAIQYYTRIGGKVSVTLIK-YENNQG-EQSSADSLVYKVLENLI 413
Query: 242 PDNVQYDLFSYRVFEYIPPLQQCFK 316
+++ Y +SY+ + + P+Q+C K
Sbjct: 414 ENSIPYLNYSYKKYRAVQPIQRCKK 438
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Frame = +2
Query: 296 PLQQCFKCFKFNHSAKICNSK------QKCSICGGE-HLYKEC----DKPTEICCTNCSG 442
P ++CF C +H AK+C K + C +C H K C D+ + C NC
Sbjct: 68 PGERCFICKAADHVAKVCPEKSLWEKNKICLLCRQRGHSLKNCPDKNDENLKKFCYNCGE 127
Query: 443 PHLAISKVCP 472
++SK CP
Sbjct: 128 SGHSLSK-CP 136
>04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420
Length = 1407
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = -1
Query: 234 LDKKVMLTVCKGTCSCPTFFVNLLIAIISYIDDSLLYNSLLEMLAGTNLIIPVFSICAAG 55
LDK+++ T C+G C V LL+ S + + + ++L +L+ T F A
Sbjct: 1068 LDKEILDTCCEGISEC---IVKLLMEYASNVQTPIGWKTVLHLLSVTGRHPETFDQSVAA 1124
Query: 54 MKALMS 37
M LM+
Sbjct: 1125 MIKLMN 1130
>02_04_0650 +
24728700-24728725,24729582-24729660,24729802-24729889,
24730216-24730297,24731083-24731278,24731432-24731816,
24733332-24734428,24734621-24734886,24735565-24735631,
24735722-24735772,24736033-24736123,24736239-24736345
Length = 844
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 234 IFYQTMFNTTYSLIEFLNIYHHCNNVSNVSSLTTQLK 344
IF++ + ++T + FLN++ HC S VS T+QL+
Sbjct: 40 IFFEEILSSTNQIYMFLNLFVHCEQGSAVS--TSQLR 74
>01_01_0833 -
6517489-6517503,6517762-6517827,6517938-6518006,
6518104-6518214,6518319-6518526,6518598-6518653,
6519048-6519689
Length = 388
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 332 HSAKICNSKQKCSICGGEHLYKECDKPTEICCTNCS-GPHLAISKVC 469
H K+ SKQ C IC + ++ D +CC C H+ + C
Sbjct: 336 HCDKLLQSKQYCGIC--KKIWHHTDGGNWVCCDECQIWVHVECDQTC 380
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 29.5 bits (63), Expect = 3.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSIC 376
+CF+CF +H A C +C C
Sbjct: 261 KCFRCFASDHQAAACRDPIRCYTC 284
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 332 HSAKICNSKQKCSICGGEHLYKECDKPTEICCTNC 436
H K+ SKQ C IC + ++ D +CC C
Sbjct: 368 HCDKLLQSKQYCGIC--KKIWHHTDGGNWVCCDEC 400
>05_01_0168 +
1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +3
Query: 192 SMFLYKL*ALLSYLIFYQTMFNTTYSLIEFL-NIYHHCNNVSNVSSLTTQLKYVTVNKNV 368
S+F + LL +I Y T ++ ++ ++ L + ++ + T+L + KNV
Sbjct: 257 SLFELNICDLLKQMITYYTSSHSDHNKVQTLVELIYYLMPPLEMCDHRTEL--IIAKKNV 314
Query: 369 LFVEVSTYTRNVTSPLKFVVQIAADLIL 452
+ E S Y + + S L F++Q+A L
Sbjct: 315 I-TEQSGYIQQLASILTFIIQVAKSAAL 341
>11_03_0226 -
11908455-11908562,11915971-11916240,11916463-11916946,
11917148-11918060,11918628-11919300
Length = 815
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQKCSICGG-EHLYKEC 403
C KCF+ H A C + C IC +H+ +C
Sbjct: 383 CSKCFEKGHVADDCVVEVYCDICDSFDHVSHKC 415
>05_01_0119 +
820566-820739,822708-822737,823153-823266,823341-823433,
823521-823586,824076-824174,824480-824559,825039-825151,
825600-825688,825955-826041,826128-826130,826285-826383
Length = 348
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 200 PLQTVSITFLSNILPDNVQYDLFSYRVFEYIPPLQQCFKCFK 325
PLQ + +SNIL QY+ Y F P+Q KC K
Sbjct: 117 PLQKYCVVSVSNILTTTCQYEALKYVSF----PVQTLAKCAK 154
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +2
Query: 239 LPDNVQYDLFSYRVFEYIPPLQQCFKCFKFNHS-----AKICNSKQKCSICGGEH 388
LPD +L + PP + C CFK +S ++ N K SICG H
Sbjct: 524 LPDQNTCNLCGMERLLFEPPPRFCALCFKIINSTGSYYVEVENGNDKSSICGRCH 578
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,605
Number of Sequences: 37544
Number of extensions: 325480
Number of successful extensions: 1009
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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