Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16c01
(789 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding prot... 44 5e-04
M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein. 44 5e-04
BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger, ... 44 5e-04
BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein. 44 5e-04
BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein. 44 5e-04
AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9 p... 44 5e-04
AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens ... 44 5e-04
DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid b... 44 8e-04
DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid b... 44 8e-04
BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (... 44 8e-04
DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid b... 43 0.001
X95425-1|CAA64700.1| 1037|Homo sapiens EHK-1 receptor tyrosine k... 33 0.89
L36644-1|AAA74245.1| 991|Homo sapiens receptor protein-tyrosine... 33 0.89
BX537946-1|CAD97914.1| 969|Homo sapiens hypothetical protein pr... 33 0.89
AB209375-1|BAD92612.1| 1017|Homo sapiens ephrin receptor EphA5 i... 33 0.89
BC107584-1|AAI07585.1| 239|Homo sapiens ZCCHC3 protein protein. 31 4.7
BC069238-1|AAH69238.1| 403|Homo sapiens zinc finger, CCHC domai... 31 4.7
AL034548-4|CAB81631.1| 404|Homo sapiens zinc finger, CCHC domai... 31 4.7
>U19765-1|AAA91782.1| 177|Homo sapiens nucleic acid binding protein
protein.
Length = 177
Score = 44.4 bits (100), Expect = 5e-04
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQK-CSICG-GEHLYKECDKPT---EICCTNCSGP-HLA 454
C++C + H AK C+ ++ C CG G H+ K+C +P E CC NC P HLA
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 108
Score = 41.1 bits (92), Expect = 0.004
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKPTEICCTNC-SGPHLA 454
Q+C+ C +F H K C +K KC CG H+ C K +E+ C C HLA
Sbjct: 117 QKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLA 168
>M28372-1|AAA61975.1| 177|Homo sapiens SRE-binding protein protein.
Length = 177
Score = 44.4 bits (100), Expect = 5e-04
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQK-CSICG-GEHLYKECDKPT---EICCTNCSGP-HLA 454
C++C + H AK C+ ++ C CG G H+ K+C +P E CC NC P HLA
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 108
Score = 41.1 bits (92), Expect = 0.004
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKPTEICCTNC-SGPHLA 454
Q+C+ C +F H K C +K KC CG H+ C K +E+ C C HLA
Sbjct: 117 QKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLA 168
>BC093058-1|AAH93058.1| 177|Homo sapiens CCHC-type zinc finger,
nucleic acid binding protein protein.
Length = 177
Score = 44.4 bits (100), Expect = 5e-04
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQK-CSICG-GEHLYKECDKPT---EICCTNCSGP-HLA 454
C++C + H AK C+ ++ C CG G H+ K+C +P E CC NC P HLA
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 108
Score = 41.1 bits (92), Expect = 0.004
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKPTEICCTNC-SGPHLA 454
Q+C+ C +F H K C +K KC CG H+ C K +E+ C C HLA
Sbjct: 117 QKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLA 168
>BC014911-1|AAH14911.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 44.4 bits (100), Expect = 5e-04
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQK-CSICG-GEHLYKECDKPT---EICCTNCSGP-HLA 454
C++C + H AK C+ ++ C CG G H+ K+C +P E CC NC P HLA
Sbjct: 47 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 101
Score = 41.1 bits (92), Expect = 0.004
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKPTEICCTNC-SGPHLA 454
Q+C+ C +F H K C +K KC CG H+ C K +E+ C C HLA
Sbjct: 110 QKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLA 161
>BC000288-1|AAH00288.1| 170|Homo sapiens CNBP protein protein.
Length = 170
Score = 44.4 bits (100), Expect = 5e-04
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQK-CSICG-GEHLYKECDKPT---EICCTNCSGP-HLA 454
C++C + H AK C+ ++ C CG G H+ K+C +P E CC NC P HLA
Sbjct: 47 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 101
Score = 41.1 bits (92), Expect = 0.004
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKPTEICCTNC-SGPHLA 454
Q+C+ C +F H K C +K KC CG H+ C K +E+ C C HLA
Sbjct: 110 QKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLA 161
>AY329622-1|AAR89462.1| 177|Homo sapiens zinc finger protein 9
protein.
Length = 177
Score = 44.4 bits (100), Expect = 5e-04
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQK-CSICG-GEHLYKECDKPT---EICCTNCSGP-HLA 454
C++C + H AK C+ ++ C CG G H+ K+C +P E CC NC P HLA
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 108
Score = 41.1 bits (92), Expect = 0.004
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKPTEICCTNC-SGPHLA 454
Q+C+ C +F H K C +K KC CG H+ C K +E+ C C HLA
Sbjct: 117 QKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLA 168
>AK054592-1|BAB70769.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ30030 fis, clone 3NB692001339, highly similar to
CELLULAR NUCLEIC ACID BINDING PROTEIN. ).
Length = 167
Score = 44.4 bits (100), Expect = 5e-04
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQK-CSICG-GEHLYKECDKPT---EICCTNCSGP-HLA 454
C++C + H AK C+ ++ C CG G H+ K+C +P E CC NC P HLA
Sbjct: 44 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 98
Score = 41.1 bits (92), Expect = 0.004
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKPTEICCTNC-SGPHLA 454
Q+C+ C +F H K C +K KC CG H+ C K +E+ C C HLA
Sbjct: 107 QKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLA 158
>DQ092366-1|AAY96754.1| 171|Homo sapiens cellular nucleic acid
binding protein beta variant 1 protein.
Length = 171
Score = 43.6 bits (98), Expect = 8e-04
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQK--CSICG-GEHLYKECDKPT---EICCTNCSGP-HLA 454
C++C + H AK C+ ++ C CG G H+ K+C +P E CC NC P HLA
Sbjct: 47 CYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 102
Score = 41.1 bits (92), Expect = 0.004
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKPTEICCTNC-SGPHLA 454
Q+C+ C +F H K C +K KC CG H+ C K +E+ C C HLA
Sbjct: 111 QKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLA 162
>DQ091187-1|AAY89856.1| 178|Homo sapiens cellular nucleic acid
binding protein alpha variant 1 protein.
Length = 178
Score = 43.6 bits (98), Expect = 8e-04
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQK--CSICG-GEHLYKECDKPT---EICCTNCSGP-HLA 454
C++C + H AK C+ ++ C CG G H+ K+C +P E CC NC P HLA
Sbjct: 54 CYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 109
Score = 41.1 bits (92), Expect = 0.004
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKPTEICCTNC-SGPHLA 454
Q+C+ C +F H K C +K KC CG H+ C K +E+ C C HLA
Sbjct: 118 QKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLA 169
>BT019613-1|AAV38419.1| 178|Homo sapiens zinc finger protein 9 (a
cellular retroviral nucleic acid binding protein)
protein.
Length = 178
Score = 43.6 bits (98), Expect = 8e-04
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQK--CSICG-GEHLYKECDKPT---EICCTNCSGP-HLA 454
C++C + H AK C+ ++ C CG G H+ K+C +P E CC NC P HLA
Sbjct: 54 CYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 109
Score = 41.1 bits (92), Expect = 0.004
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKPTEICCTNC-SGPHLA 454
Q+C+ C +F H K C +K KC CG H+ C K +E+ C C HLA
Sbjct: 118 QKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLA 169
>DQ092367-1|AAY96755.1| 172|Homo sapiens cellular nucleic acid
binding protein beta variant 2 protein.
Length = 172
Score = 42.7 bits (96), Expect = 0.001
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQK---CSICG-GEHLYKECDKPT---EICCTNCSGP-HLA 454
C++C + H AK C+ ++ C CG G H+ K+C +P E CC NC P HLA
Sbjct: 47 CYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLA 103
Score = 41.1 bits (92), Expect = 0.004
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDKPTEICCTNC-SGPHLA 454
Q+C+ C +F H K C +K KC CG H+ C K +E+ C C HLA
Sbjct: 112 QKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLA 163
>X95425-1|CAA64700.1| 1037|Homo sapiens EHK-1 receptor tyrosine
kinase protein.
Length = 1037
Score = 33.5 bits (73), Expect = 0.89
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 281 FEYIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEICCTNCSGPHLAIS 460
F+ P +Q C KC +++ + + C +C ++ +E D PT C S P AIS
Sbjct: 310 FKASPHIQSCGKCPPHSYTHE--EASTSC-VCEKDYFRRESDPPTMACTRPPSAPRNAIS 366
Query: 461 KV 466
V
Sbjct: 367 NV 368
>L36644-1|AAA74245.1| 991|Homo sapiens receptor protein-tyrosine
kinase protein.
Length = 991
Score = 33.5 bits (73), Expect = 0.89
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 281 FEYIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEICCTNCSGPHLAIS 460
F+ P +Q C KC +++ + + C +C ++ +E D PT C S P AIS
Sbjct: 286 FKASPHIQSCGKCPPHSYTHE--EASTSC-VCEKDYFRRESDPPTMACTRPPSAPRNAIS 342
Query: 461 KV 466
V
Sbjct: 343 NV 344
>BX537946-1|CAD97914.1| 969|Homo sapiens hypothetical protein
protein.
Length = 969
Score = 33.5 bits (73), Expect = 0.89
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 281 FEYIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEICCTNCSGPHLAIS 460
F+ P +Q C KC +++ + + C +C ++ +E D PT C S P AIS
Sbjct: 241 FKASPHIQSCGKCPPHSYTHE--EASTSC-VCEKDYFRRESDPPTMACTRPPSAPRNAIS 297
Query: 461 KV 466
V
Sbjct: 298 NV 299
>AB209375-1|BAD92612.1| 1017|Homo sapiens ephrin receptor EphA5
isoform a variant protein.
Length = 1017
Score = 33.5 bits (73), Expect = 0.89
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 281 FEYIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEICCTNCSGPHLAIS 460
F+ P +Q C KC +++ + + C +C ++ +E D PT C S P AIS
Sbjct: 323 FKASPHIQSCGKCPPHSYTHE--EASTSC-VCEKDYFRRESDPPTMACTRPPSAPRNAIS 379
Query: 461 KV 466
V
Sbjct: 380 NV 381
>BC107584-1|AAI07585.1| 239|Homo sapiens ZCCHC3 protein protein.
Length = 239
Score = 31.1 bits (67), Expect = 4.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDK 409
+CF+C + H + C C++CG H + +C K
Sbjct: 188 RCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPK 223
>BC069238-1|AAH69238.1| 403|Homo sapiens zinc finger, CCHC domain
containing 3 protein.
Length = 403
Score = 31.1 bits (67), Expect = 4.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDK 409
+CF+C + H + C C++CG H + +C K
Sbjct: 352 RCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPK 387
>AL034548-4|CAB81631.1| 404|Homo sapiens zinc finger, CCHC domain
containing 3 protein.
Length = 404
Score = 31.1 bits (67), Expect = 4.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGE-HLYKECDK 409
+CF+C + H + C C++CG H + +C K
Sbjct: 353 RCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPK 388
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,667,723
Number of Sequences: 237096
Number of extensions: 2057747
Number of successful extensions: 8330
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8327
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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