Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16c01
(789 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-1|CAC16870.1| 433|Drosophila melanogaster gag protein. 67 2e-11
X68130-1|CAA48237.1| 943|Drosophila melanogaster protein ( D.me... 60 3e-09
U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag p... 60 3e-09
AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein ... 60 4e-09
AJ542581-1|CAD65868.3| 965|Drosophila melanogaster gag protein ... 59 8e-09
X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element prot... 56 4e-08
S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein. 56 4e-08
AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown prot... 56 4e-08
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ... 54 2e-07
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl... 53 5e-07
AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein ... 53 5e-07
AY035777-1|AAK77970.1| 257|Drosophila melanogaster gag protein ... 53 5e-07
AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein ... 53 5e-07
M14954-1|AAA70221.1| 426|Drosophila melanogaster putative ORF1 ... 52 9e-07
M38643-1|AAA28939.1| 549|Drosophila melanogaster protein ( D.me... 48 1e-05
M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic acid-b... 48 1e-05
M17214-1|AAA28507.1| 122|Drosophila melanogaster protein ( D.me... 45 1e-04
AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p pro... 39 0.009
AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p pro... 39 0.009
AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA... 39 0.009
X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putat... 38 0.021
BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p pro... 38 0.021
AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like pro... 38 0.021
X51968-1|CAA36226.1| 471|Drosophila melanogaster protein ( Dros... 37 0.036
AY118707-1|AAM50567.1| 186|Drosophila melanogaster AT22983p pro... 36 0.048
AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical... 34 0.19
AE014296-3405|AAZ66070.1| 165|Drosophila melanogaster CG33912-P... 31 1.4
U23420-1|AAB03640.1| 1607|Drosophila melanogaster unknown protein. 31 1.8
AF210453-1|AAF21041.1| 4559|Drosophila melanogaster dynein heavy... 31 2.4
AF136253-1|AAF21334.1| 579|Drosophila melanogaster dynein protein. 31 2.4
AF136252-1|AAF21333.1| 579|Drosophila melanogaster dynein protein. 31 2.4
AF136251-1|AAF21332.1| 579|Drosophila melanogaster dynein protein. 31 2.4
AF136250-1|AAF21331.1| 579|Drosophila melanogaster dynein protein. 31 2.4
AF136249-1|AAF21330.1| 579|Drosophila melanogaster dynein protein. 31 2.4
AF136248-1|AAF21329.1| 579|Drosophila melanogaster dynein protein. 31 2.4
AF136247-1|AAF21328.1| 579|Drosophila melanogaster dynein protein. 31 2.4
AF136246-1|AAF21327.1| 579|Drosophila melanogaster dynein protein. 31 2.4
AF136245-1|AAF21326.1| 579|Drosophila melanogaster dynein protein. 31 2.4
AF136244-1|AAF21325.1| 579|Drosophila melanogaster dynein protein. 31 2.4
AF136243-1|AAF21324.1| 579|Drosophila melanogaster dynein protein. 31 2.4
AY058640-1|AAL13869.1| 950|Drosophila melanogaster LD33980p pro... 29 5.5
AE014134-3001|AAN11019.1| 950|Drosophila melanogaster CG10637-P... 29 5.5
AE014134-3000|AAF53727.2| 1488|Drosophila melanogaster CG10637-P... 29 5.5
AF197910-1|AAF15596.1| 1490|Drosophila melanogaster Numb-associa... 29 7.2
Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia poly... 29 9.6
BT024233-1|ABC86295.1| 527|Drosophila melanogaster LD13366p pro... 29 9.6
BT010282-1|AAQ23600.1| 1001|Drosophila melanogaster RE04457p pro... 29 9.6
AY089467-1|AAL90205.1| 597|Drosophila melanogaster AT27838p pro... 29 9.6
AY047503-1|AAK77235.1| 615|Drosophila melanogaster GH01279p pro... 29 9.6
AF275814-1|AAF78092.1| 527|Drosophila melanogaster DREAM protein. 29 9.6
AF242735-1|AAF78902.1| 527|Drosophila melanogaster STRICA protein. 29 9.6
AE014298-1203|AAS65290.1| 1001|Drosophila melanogaster CG11265-P... 29 9.6
AE014298-1202|AAS65289.1| 1029|Drosophila melanogaster CG11265-P... 29 9.6
AE014298-1201|AAS65288.1| 1029|Drosophila melanogaster CG11265-P... 29 9.6
AE014298-1200|AAF46390.2| 1029|Drosophila melanogaster CG11265-P... 29 9.6
AE014297-577|AAF54049.2| 597|Drosophila melanogaster CG14609-PA... 29 9.6
AE014296-901|AAF47941.2| 615|Drosophila melanogaster CG7509-PA ... 29 9.6
AE013599-133|AAF57292.2| 527|Drosophila melanogaster CG7863-PA ... 29 9.6
>AJ302712-1|CAC16870.1| 433|Drosophila melanogaster gag protein.
Length = 433
Score = 67.3 bits (157), Expect = 2e-11
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Frame = +2
Query: 104 NISNKELYSRLSSIYEIIAIRRFTKKVGHEHVPLQTVSITFLSNILPDNVQYDLFSYRVF 283
NI E+ L S + ++ +FTK + P V +TF LP + + +V
Sbjct: 137 NIPENEIVEELKS-QNVHSVFKFTKMIDGTPKPFGKVLVTFDRFTLPSKLTVSWHTVKVS 195
Query: 284 EYIPPLQQCFKCFKFNHSAKICNSKQKCSICG-GEHLYKECDKPTEICCTNCSGPHLAIS 460
EYIP +C C H++K C + C C HL C T I C NC+G H A S
Sbjct: 196 EYIPNPMRCKSCQLLGHTSKHCKNPPACVSCNLAPHLPVPC---TRIFCANCTGQHPASS 252
Query: 461 KVCP 472
CP
Sbjct: 253 PECP 256
>X68130-1|CAA48237.1| 943|Drosophila melanogaster protein (
D.melanogaster DNA sequenceof Het-A transposable element
9D4. ).
Length = 943
Score = 60.5 bits (140), Expect = 3e-09
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP--TEICCTNCSGPHLAISKVCP 472
QC++C F H+ C +C C GEHL C KP T C NCSG H++ K CP
Sbjct: 647 QCYRCQGFRHAKNSCMRPPRCMKCAGEHLSSCCTKPRTTPATCVNCSGQHISAYKGCP 704
>U06920-1|AAC17188.3| 921|Drosophila melanogaster probable gag
protein protein.
Length = 921
Score = 60.5 bits (140), Expect = 3e-09
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP--TEICCTNCSGPHLAISKVCP 472
QC++C F H+ C +C C GEHL C KP T C NCSG H++ K CP
Sbjct: 625 QCYRCQGFRHAKNSCMRPPRCMKCAGEHLSSCCTKPRTTPATCVNCSGQHISAYKGCP 682
>AJ635224-1|CAG25619.1| 951|Drosophila melanogaster gag protein
protein.
Length = 951
Score = 59.7 bits (138), Expect = 4e-09
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP--TEICCTNCSGPHLAISKVCP 472
QC++C F H+ C +C C G+HL C KP T C NCSG H++ K CP
Sbjct: 655 QCYRCQGFRHAKNSCMKPPRCMKCAGDHLSSCCTKPRSTPATCVNCSGEHISAYKGCP 712
>AJ542581-1|CAD65868.3| 965|Drosophila melanogaster gag protein
protein.
Length = 965
Score = 58.8 bits (136), Expect = 8e-09
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP--TEICCTNCSGPHLAISKVCP 472
QC++C F HS C +C C G HL C KP T C NCSG H++ K CP
Sbjct: 662 QCYRCQGFRHSKNSCMRPPRCMKCAGGHLSSCCTKPRTTPATCVNCSGEHISAYKGCP 719
>X68816-2|CAA48714.1| 536|Drosophila melanogaster T-element
protein.
Length = 536
Score = 56.4 bits (130), Expect = 4e-08
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP--TEICCTNCSGPHLAISKVCP 472
QC++C F H+ C +C GEHL C KP T C NCSG H++ K CP
Sbjct: 240 QCYRCQGFRHAKNSCMRPPRCMKSAGEHLSSCCTKPRTTPATCVNCSGQHISAYKGCP 297
>S56442-2|AAA14198.2| 536|Drosophila melanogaster Orf2 protein.
Length = 536
Score = 56.4 bits (130), Expect = 4e-08
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP--TEICCTNCSGPHLAISKVCP 472
QC++C F H+ C +C GEHL C KP T C NCSG H++ K CP
Sbjct: 240 QCYRCQGFRHAKNSCMRPPRCMKSAGEHLSSCCTKPRTTPATCVNCSGQHISAYKGCP 297
>AF237761-1|AAF81410.1| 501|Drosophila melanogaster unknown
protein.
Length = 501
Score = 56.4 bits (130), Expect = 4e-08
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKP-TEIC-CTNCSGPHLAISKVC 469
QC +C + H+AK C C C GEH K+C +P E+C C NC G H A K C
Sbjct: 286 QCHRCQQIGHTAKYCRKAHICVKCAGEHPAKDCTRPRIELCTCYNCGGQHPANYKGC 342
>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
protein.
Length = 1047
Score = 54.0 bits (124), Expect = 2e-07
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEI--CCTNCSGPHLAISKVCPXX 478
QC +C F H+ C + KC CG H C KP + C NC+G H++ K CP
Sbjct: 794 QCHRCQCFGHTKNYCRNPFKCMKCGQLHASVSCTKPKNLPATCANCNGSHVSSYKGCPVF 853
Query: 479 XXXXXXXXXXXTYA--SATSTKQVNNNDFP-PLPT------SKTPVYNTVNKSVYNSVNK 631
+ S + Q N P P PT +K P + + +++ N+
Sbjct: 854 QEAKQRLSINKIQSLHSQPTHLQTPRNKHPYPKPTHIQTPLNKQPYTHPLPRTLVNNTKL 913
Query: 632 PLYNSVNKPVNTHVDNVNKQ 691
P K ++ ++NK+
Sbjct: 914 PAKRIQGKKISQRNLSINKR 933
>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
single-stranded nucleicacid binding protein protein.
Length = 1043
Score = 52.8 bits (121), Expect = 5e-07
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEI--CCTNCSGPHLAISKVCP 472
QC +C F H+ C + KC CG H C KP + C NC+G H++ K CP
Sbjct: 794 QCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNLPATCANCNGSHVSSYKGCP 851
>AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 52.8 bits (121), Expect = 5e-07
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEI--CCTNCSGPHLAISKVCP 472
QC +C F H+ C + KC CG H C KP + C NC+G H++ K CP
Sbjct: 717 QCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNLPATCANCNGSHVSSYKGCP 774
>AY035777-1|AAK77970.1| 257|Drosophila melanogaster gag protein
protein.
Length = 257
Score = 52.8 bits (121), Expect = 5e-07
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEI--CCTNCSGPHLAISKVCP 472
QC +C F H+ C + KC CG H C KP + C NC+G H++ K CP
Sbjct: 4 QCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNLPATCANCNGSHVSSYKGCP 61
>AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 52.8 bits (121), Expect = 5e-07
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEI--CCTNCSGPHLAISKVCP 472
QC +C F H+ C + KC CG H C KP + C NC+G H++ K CP
Sbjct: 717 QCHRCQCFGHTKNYCRNPFKCMKCGQLHATVSCTKPKNLPATCANCNGSHVSSYKGCP 774
>M14954-1|AAA70221.1| 426|Drosophila melanogaster putative ORF1
protein.
Length = 426
Score = 52.0 bits (119), Expect = 9e-07
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Frame = +2
Query: 212 VSITFLSNILPDNVQYDLFSYRVFEYIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEHL 391
+ ITF S+ LP+ V+ + RV +YIP +C KC +F H IC S + C C
Sbjct: 156 IIITFESHKLPEIVRIGYETVRVRDYIPLPLRCKKCLRFGHPTPICKSVETCINCSETKH 215
Query: 392 YKECDKPT-EICCTNC-SGP-----HLAISKVCP 472
+ +K T E C NC + P H I + CP
Sbjct: 216 TNDGEKCTNEKNCLNCRNNPELDHQHSPIDRKCP 249
>M38643-1|AAA28939.1| 549|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 549
Score = 48.0 bits (109), Expect = 1e-05
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 299 LQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEIC-CTNCSGPHLAISKVCP 472
L QC +C F HS C C C G H+ +++C C NC G H++ K CP
Sbjct: 368 LLQCQRCQIFGHSKNYCAQDPICGKCSGPHMTGFALCISDVCLCINCGGDHVSTDKSCP 426
>M22874-1|AAA28674.1| 583|Drosophila melanogaster nucleic
acid-binding protiein protein.
Length = 583
Score = 48.0 bits (109), Expect = 1e-05
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 299 LQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEIC-CTNCSGPHLAISKVCP 472
L QC +C F HS C C C G H+ +++C C NC G H++ K CP
Sbjct: 402 LLQCQRCQIFGHSKNYCAQDPICGKCSGPHMTGFALCISDVCLCINCGGDHVSTDKSCP 460
>M17214-1|AAA28507.1| 122|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 122
Score = 45.2 bits (102), Expect = 1e-04
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKEC----DKPTEICCTNCSGPHLAISKVCP 472
QC C ++ H+ C C +CG H K+C + E C NC G H A + CP
Sbjct: 39 QCTNCQEYGHTRSYCTLAPVCVVCGDLHDSKQCQINKENACEKKCNNCGGNHTANYRGCP 98
>AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p
protein.
Length = 165
Score = 38.7 bits (86), Expect = 0.009
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKIC-NSKQKCSICGG-EHLYKECDKPTEICCTNCS 439
++C+KC +F H A+ C ++C C G H+ K+C + C C+
Sbjct: 55 EKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCN 102
>AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p
protein.
Length = 165
Score = 38.7 bits (86), Expect = 0.009
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKIC-NSKQKCSICGG-EHLYKECDKPTEICCTNCS 439
++C+KC +F H A+ C ++C C G H+ K+C + C C+
Sbjct: 55 EKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCN 102
>AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA
protein.
Length = 165
Score = 38.7 bits (86), Expect = 0.009
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 302 QQCFKCFKFNHSAKIC-NSKQKCSICGG-EHLYKECDKPTEICCTNCS 439
++C+KC +F H A+ C ++C C G H+ K+C + C C+
Sbjct: 55 EKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCN 102
>X17551-1|CAA35586.1| 565|Drosophila melanogaster ORF1 for putative
RNA bindingprotein protein.
Length = 565
Score = 37.5 bits (83), Expect = 0.021
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKEC----DKPTEICCTNCSGPHLAISKVC 469
QC C ++ H+ C K C +C H C D + C+NC H A + C
Sbjct: 383 QCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKKCSNCGEKHTANYRGC 441
>BT014916-1|AAT47767.1| 409|Drosophila melanogaster RE14563p
protein.
Length = 409
Score = 37.5 bits (83), Expect = 0.021
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = +2
Query: 305 QCFKCFKFNHSAKICNSKQKCSICGGEHLYKEC----DKPTEICCTNCSGPHLAISKVC 469
QC C ++ H+ C K C +C H C D + C+NC H A + C
Sbjct: 227 QCTNCQEYGHTKAYCTLKSVCVVCSEPHTTANCPKNKDDKSVKKCSNCGEKHTANYRGC 285
>AJ278684-1|CAB99191.1| 488|Drosophila melanogaster gag-like
protein protein.
Length = 488
Score = 37.5 bits (83), Expect = 0.021
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +2
Query: 275 RVFEYIPPLQQCFKCFKFNHSAKICNS--KQKCSICGGEHLYKE--CDKPTE--ICCTNC 436
R+ + + P++ CF+C +F H A C S + C + GEH +K C P IC ++
Sbjct: 399 RIAQDVRPIR-CFRCLEFGHRAPYCKSVDRSDCCLRCGEHGHKAKGCVAPPRCLICSSDV 457
Query: 437 SGPHLAISKVCP 472
H CP
Sbjct: 458 DKNHATGGFACP 469
>X51968-1|CAA36226.1| 471|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 471
Score = 36.7 bits (81), Expect = 0.036
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQK-CSICGGE-HLYKECDKPTEICCTNC-----SGPHLAISKV 466
C +C F+H C K+ C CG + H +C P + C NC H +S
Sbjct: 399 CHRCVGFDHKVSECRQKESVCRQCGQQGHTAAKCQNPVD--CRNCRHRGQPSGHYMLSNA 456
Query: 467 CP 472
CP
Sbjct: 457 CP 458
>AY118707-1|AAM50567.1| 186|Drosophila melanogaster AT22983p
protein.
Length = 186
Score = 36.3 bits (80), Expect = 0.048
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 6/138 (4%)
Frame = +2
Query: 44 RAFIPAAQIEKTGIIRFVPANISNKELYSRLSSIYEIIAIRRFTKKVGHEHVPLQTVSIT 223
RA + A K +IR + + EL S L + EI A K + +T I
Sbjct: 10 RASLRALTQSKVFLIRDLDELTTEDELKSALEAQAEIPAAVVAIKSLRKTQYGGKTAVIA 69
Query: 224 FLSNILPDNVQYDL--FSYRVFEYIPPLQQCFKCFKFNHSAKICNS----KQKCSICGGE 385
+N+ ++ +S + + + P Q+CF+C + H A C S Q C CG
Sbjct: 70 VPANLADPLIKRGRVGWSQCLIKELEPRQRCFRCLEEGHIAAHCRSTVDRSQCCFRCGTA 129
Query: 386 HLYKECDKPTEICCTNCS 439
EC P E C C+
Sbjct: 130 GHKAEC--PKEAKCFLCA 145
>AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical
protein protein.
Length = 1830
Score = 34.3 bits (75), Expect = 0.19
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 287 YIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEH 388
YI Q C CF H + C S C C G H
Sbjct: 457 YIKKKQLCLNCFARGHQLRDCTSMHSCFTCKGRH 490
>AE014296-3405|AAZ66070.1| 165|Drosophila melanogaster CG33912-PA
protein.
Length = 165
Score = 31.5 bits (68), Expect = 1.4
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 207 KL*ALLSYLIFYQTMFNTTYSLIEFLNIYHHCNNVSNVSSLTTQLKYVTVNKNVLFVEV 383
KL +S+L++ F YSL+EF N+ C ++ +L +VN++ +V +
Sbjct: 4 KLILFISFLMYSTCYFTEVYSLVEFANV--QCESLDKDFALIEYCYLKSVNRSYKYVSI 60
>U23420-1|AAB03640.1| 1607|Drosophila melanogaster unknown protein.
Length = 1607
Score = 31.1 bits (67), Expect = 1.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 242 PDNVQYDLFSYRVFEYIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEH 388
P + D+ S R +++ + CF C H C S+ C IC +H
Sbjct: 195 PQFIALDIASRR--DFLKSRKLCFNCLSPAHMVGNCTSRHTCRICRRKH 241
>AF210453-1|AAF21041.1| 4559|Drosophila melanogaster dynein heavy
chain protein.
Length = 4559
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTH 670
T K+ V+ T+NK+ N KP YN +N T+
Sbjct: 2226 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 2258
>AF136253-1|AAF21334.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTH 670
T K+ V+ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136252-1|AAF21333.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTH 670
T K+ V+ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136251-1|AAF21332.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTH 670
T K+ V+ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136250-1|AAF21331.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTH 670
T K+ V+ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136249-1|AAF21330.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTH 670
T K+ V+ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136248-1|AAF21329.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTH 670
T K+ V+ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136247-1|AAF21328.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTH 670
T K+ V+ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136246-1|AAF21327.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTH 670
T K+ V+ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136245-1|AAF21326.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTH 670
T K+ V+ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136244-1|AAF21325.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTH 670
T K+ V+ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AF136243-1|AAF21324.1| 579|Drosophila melanogaster dynein protein.
Length = 579
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 572 TSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTH 670
T K+ V+ T+NK+ N KP YN +N T+
Sbjct: 530 TGKSEVWKTLNKTYQNQKRKPHYNDLNPKAVTN 562
>AY058640-1|AAL13869.1| 950|Drosophila melanogaster LD33980p
protein.
Length = 950
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +2
Query: 548 NNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTHVDNVNKQQDLLPLE 712
+ +F P TP N N + + N+P++N + Q DL LE
Sbjct: 554 STNFASFPAQLTPTNNVGNSAQLDEFNEPIFNPFQENAQNTQSGETNQCDLFGLE 608
>AE014134-3001|AAN11019.1| 950|Drosophila melanogaster CG10637-PB,
isoform B protein.
Length = 950
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +2
Query: 548 NNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTHVDNVNKQQDLLPLE 712
+ +F P TP N N + + N+P++N + Q DL LE
Sbjct: 554 STNFASFPAQLTPTNNVGNSAQLDEFNEPIFNPFQENAQNTQSGETNQCDLFGLE 608
>AE014134-3000|AAF53727.2| 1488|Drosophila melanogaster CG10637-PA,
isoform A protein.
Length = 1488
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +2
Query: 548 NNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTHVDNVNKQQDLLPLE 712
+ +F P TP N N + + N+P++N + Q DL LE
Sbjct: 1092 STNFASFPAQLTPTNNVGNSAQLDEFNEPIFNPFQENAQNTQSGETNQCDLFGLE 1146
>AF197910-1|AAF15596.1| 1490|Drosophila melanogaster Numb-associated
kinase protein.
Length = 1490
Score = 29.1 bits (62), Expect = 7.2
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +2
Query: 548 NNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTHVDNVNKQQDLLPLE 712
+ +F P + TP N N + + N P++N + Q DL LE
Sbjct: 1092 STNFASFPANVTPTNNVGNSAQLDEFNAPIFNPFQENAQNTQSGETNQCDLFGLE 1146
>Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia
polyprotein protein.
Length = 1333
Score = 28.7 bits (61), Expect = 9.6
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQKCSICGGE-HLYKEC 403
CF C H K C KC C E H+ +C
Sbjct: 268 CFNCGSREHKRKDCTLPTKCFSCNQEGHISSKC 300
>BT024233-1|ABC86295.1| 527|Drosophila melanogaster LD13366p
protein.
Length = 527
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 521 SATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVN-KP 658
S+TS+ ++ PP P+S +++ KS V+KPL ++ KP
Sbjct: 221 SSTSSSSASSITSPPKPSSSVSSISSIFKSAPKQVDKPLSSTATPKP 267
>BT010282-1|AAQ23600.1| 1001|Drosophila melanogaster RE04457p
protein.
Length = 1001
Score = 28.7 bits (61), Expect = 9.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 512 TYASATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPL----YNSVNKPVNTHVDN 679
T +S++S+ NNN+ + NT N + NS KP Y+S+N+ +N D+
Sbjct: 49 TSSSSSSSNSGNNNNNNNNNIINNTITNTTNNTGNNSSAKPYLSRPYSSLNRVLNFRADS 108
Query: 680 V 682
+
Sbjct: 109 L 109
>AY089467-1|AAL90205.1| 597|Drosophila melanogaster AT27838p
protein.
Length = 597
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 593 NTVNKSVYNSVNK-PLYNSVNKPVNTHVDNVNKQQDLLPLENIKNQIVSNNDVLM 754
N KS N +K + +++ KP T + N NK ++ P N+K + +++
Sbjct: 279 NMEEKSRKNLQHKLQMLSALKKPAGTSIANFNKPKEAAPTTNLKRYVRETQSMMI 333
>AY047503-1|AAK77235.1| 615|Drosophila melanogaster GH01279p
protein.
Length = 615
Score = 28.7 bits (61), Expect = 9.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 2 ILY*NSSFLEKYDMRAFIPAAQIEKTGI 85
IL N++ L+ +D RAF P +Q+EK I
Sbjct: 449 ILLLNNNILKNFDARAFEPLSQLEKLRI 476
>AF275814-1|AAF78092.1| 527|Drosophila melanogaster DREAM protein.
Length = 527
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 521 SATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVN-KP 658
S+TS+ ++ PP P+S +++ KS V+KPL ++ KP
Sbjct: 221 SSTSSSSASSITSPPKPSSSVSSISSIFKSAPKQVDKPLSSTATPKP 267
>AF242735-1|AAF78902.1| 527|Drosophila melanogaster STRICA protein.
Length = 527
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 521 SATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVN-KP 658
S+TS+ ++ PP P+S +++ KS V+KPL ++ KP
Sbjct: 221 SSTSSSSASSITSPPKPSSSVSSISSIFKSAPKQVDKPLSSTATPKP 267
>AE014298-1203|AAS65290.1| 1001|Drosophila melanogaster CG11265-PE,
isoform E protein.
Length = 1001
Score = 28.7 bits (61), Expect = 9.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 512 TYASATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPL----YNSVNKPVNTHVDN 679
T +S++S+ NNN+ + NT N + NS KP Y+S+N+ +N D+
Sbjct: 49 TSSSSSSSNSGNNNNNNNNNIINNTITNTTNNTGNNSSAKPYLSRPYSSLNRVLNFRADS 108
Query: 680 V 682
+
Sbjct: 109 L 109
>AE014298-1202|AAS65289.1| 1029|Drosophila melanogaster CG11265-PC,
isoform C protein.
Length = 1029
Score = 28.7 bits (61), Expect = 9.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 512 TYASATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPL----YNSVNKPVNTHVDN 679
T +S++S+ NNN+ + NT N + NS KP Y+S+N+ +N D+
Sbjct: 49 TSSSSSSSNSGNNNNNNNNNIINNTITNTTNNTGNNSSAKPYLSRPYSSLNRVLNFRADS 108
Query: 680 V 682
+
Sbjct: 109 L 109
>AE014298-1201|AAS65288.1| 1029|Drosophila melanogaster CG11265-PB,
isoform B protein.
Length = 1029
Score = 28.7 bits (61), Expect = 9.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 512 TYASATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPL----YNSVNKPVNTHVDN 679
T +S++S+ NNN+ + NT N + NS KP Y+S+N+ +N D+
Sbjct: 49 TSSSSSSSNSGNNNNNNNNNIINNTITNTTNNTGNNSSAKPYLSRPYSSLNRVLNFRADS 108
Query: 680 V 682
+
Sbjct: 109 L 109
>AE014298-1200|AAF46390.2| 1029|Drosophila melanogaster CG11265-PA,
isoform A protein.
Length = 1029
Score = 28.7 bits (61), Expect = 9.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 512 TYASATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPL----YNSVNKPVNTHVDN 679
T +S++S+ NNN+ + NT N + NS KP Y+S+N+ +N D+
Sbjct: 49 TSSSSSSSNSGNNNNNNNNNIINNTITNTTNNTGNNSSAKPYLSRPYSSLNRVLNFRADS 108
Query: 680 V 682
+
Sbjct: 109 L 109
>AE014297-577|AAF54049.2| 597|Drosophila melanogaster CG14609-PA
protein.
Length = 597
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 593 NTVNKSVYNSVNK-PLYNSVNKPVNTHVDNVNKQQDLLPLENIKNQIVSNNDVLM 754
N KS N +K + +++ KP T + N NK ++ P N+K + +++
Sbjct: 279 NMEEKSRKNLQHKLQMLSALKKPAGTSIANFNKPKEAAPTTNLKRYVRETQSMMI 333
>AE014296-901|AAF47941.2| 615|Drosophila melanogaster CG7509-PA
protein.
Length = 615
Score = 28.7 bits (61), Expect = 9.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 2 ILY*NSSFLEKYDMRAFIPAAQIEKTGI 85
IL N++ L+ +D RAF P +Q+EK I
Sbjct: 449 ILLLNNNILKNFDARAFEPLSQLEKLRI 476
>AE013599-133|AAF57292.2| 527|Drosophila melanogaster CG7863-PA
protein.
Length = 527
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 521 SATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVN-KP 658
S+TS+ ++ PP P+S +++ KS V+KPL ++ KP
Sbjct: 221 SSTSSSSASSITSPPKPSSSVSSISSIFKSAPKQVDKPLSSTATPKP 267
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,296,753
Number of Sequences: 53049
Number of extensions: 623764
Number of successful extensions: 2216
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 2087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2196
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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