Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16c01
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-4|AAN65289.1| 937|Caenorhabditis elegans Myc and mondo-l... 36 0.033
U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-l... 36 0.033
AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interacto... 36 0.033
AF213473-1|AAL50027.1| 913|Caenorhabditis elegans basic helix-l... 36 0.033
U97593-1|AAB52875.1| 715|Caenorhabditis elegans Hypothetical pr... 35 0.058
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 34 0.13
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr... 33 0.23
U64605-3|AAF98605.3| 423|Caenorhabditis elegans Hypothetical pr... 33 0.23
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 32 0.54
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 31 0.71
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 31 0.71
AF003142-2|AAB54190.1| 412|Caenorhabditis elegans Hypothetical ... 30 1.6
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 30 2.2
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 30 2.2
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 2.9
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 2.9
U64600-5|AAK39202.2| 223|Caenorhabditis elegans C.elegans homeo... 29 3.8
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 29 3.8
AF016436-3|AAC25896.1| 331|Caenorhabditis elegans Serpentine re... 29 3.8
AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical ... 29 5.0
Z83223-3|CAB05717.2| 385|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr... 28 8.8
U50300-6|AAC48109.1| 642|Caenorhabditis elegans Hypothetical pr... 28 8.8
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu... 28 8.8
AF039039-4|AAB94177.2| 591|Caenorhabditis elegans Hypothetical ... 28 8.8
>U10401-4|AAN65289.1| 937|Caenorhabditis elegans Myc and mondo-like
protein 1, isoformb protein.
Length = 937
Score = 35.9 bits (79), Expect = 0.033
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +2
Query: 524 ATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNS--VNKPVNTHVDNV-NKQQ 694
ATST NN F P+ + T ++ + S ++ NK ++ V+ P +HV+ + N Q
Sbjct: 432 ATSTHYSTNNSFLPIRNTMTNQHHLGHTSQHSPWNKQQQSNFLVSLPHQSHVERILNNQP 491
Query: 695 DLLPLENIKNQIVSNND 745
L+P + N + + ND
Sbjct: 492 PLVPPPSRSNLLPTQND 508
>U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-like
protein 1, isoforma protein.
Length = 1009
Score = 35.9 bits (79), Expect = 0.033
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +2
Query: 524 ATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNS--VNKPVNTHVDNV-NKQQ 694
ATST NN F P+ + T ++ + S ++ NK ++ V+ P +HV+ + N Q
Sbjct: 432 ATSTHYSTNNSFLPIRNTMTNQHHLGHTSQHSPWNKQQQSNFLVSLPHQSHVERILNNQP 491
Query: 695 DLLPLENIKNQIVSNND 745
L+P + N + + ND
Sbjct: 492 PLVPPPSRSNLLPTQND 508
>AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interactor
protein.
Length = 1009
Score = 35.9 bits (79), Expect = 0.033
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +2
Query: 524 ATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNS--VNKPVNTHVDNV-NKQQ 694
ATST NN F P+ + T ++ + S ++ NK ++ V+ P +HV+ + N Q
Sbjct: 432 ATSTHYSTNNSFLPIRNTMTNQHHLGHTSQHSPWNKQQQSNFLVSLPHQSHVERILNNQP 491
Query: 695 DLLPLENIKNQIVSNND 745
L+P + N + + ND
Sbjct: 492 PLVPPPSRSNLLPTQND 508
>AF213473-1|AAL50027.1| 913|Caenorhabditis elegans basic
helix-loop-helix leucinezipper WBSCR14-like protein
protein.
Length = 913
Score = 35.9 bits (79), Expect = 0.033
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +2
Query: 524 ATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNS--VNKPVNTHVDNV-NKQQ 694
ATST NN F P+ + T ++ + S ++ NK ++ V+ P +HV+ + N Q
Sbjct: 336 ATSTHYSTNNSFLPIRNTMTNQHHLGHTSQHSPWNKQQQSNFLVSLPHQSHVERILNNQP 395
Query: 695 DLLPLENIKNQIVSNND 745
L+P + N + + ND
Sbjct: 396 PLVPPPSRSNLLPTQND 412
>U97593-1|AAB52875.1| 715|Caenorhabditis elegans Hypothetical
protein C46G7.3 protein.
Length = 715
Score = 35.1 bits (77), Expect = 0.058
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 263 LFSYRVFEYIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEH 388
L S+ V +I +C C HS+ +C S KC+ C G H
Sbjct: 635 LASFEVRRFIANDNRCAVCAGERHSSSMCYSTLKCTYCSGRH 676
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +2
Query: 287 YIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEICCTNC 436
Y + QCFK N+ K +C+ C G H +K+C C C
Sbjct: 272 YRHSVDQCFKFINVNNRRKALIMAGRCTRCLGRHSFKDCRSAKFNVCMYC 321
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 299 LQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDKPTEICCTNCS 439
+ QCFK N+ + +C+ C G+H +K C C C+
Sbjct: 605 VDQCFKIIDVNNRREELLMGGRCTRCLGKHSFKNCRLVKLHVCRYCN 651
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 299 LQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKEC 403
+ QCFK N+ + +C+ C G+H ++ C
Sbjct: 461 VDQCFKIINVNNRREALLMGGRCTRCLGKHSFQTC 495
>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
protein C38D9.3 protein.
Length = 1496
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 263 LFSYRVFEYIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDK 409
L S + E I + C C +H K C S + C+ C G+H C K
Sbjct: 716 LSSKQFREVIREKRLCANCLNPHHDIKKCRSYRSCAYCMGKHHSGACPK 764
>U64605-3|AAF98605.3| 423|Caenorhabditis elegans Hypothetical
protein C05D9.3 protein.
Length = 423
Score = 33.1 bits (72), Expect = 0.23
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +2
Query: 314 KCFKFNHSAKICNSKQKCSICGGEHLYKECDKPT---EIC-CTNCSGPHLAISKVC 469
KC +FN S+ +C++ KC CG +C+KPT + C C N S P KVC
Sbjct: 270 KC-RFNSSSPVCSASGKCK-CG----QCQCNKPTVTGKFCQCDNDSCPLAVNGKVC 319
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 31.9 bits (69), Expect = 0.54
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQKCSICGGEH 388
C C NH + C S +KC+ C G H
Sbjct: 551 CAICLVRNHHTQQCKSNRKCTYCAGAH 577
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 263 LFSYRVFEYIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDK 409
L S + E I + C C +H + C S + C+ C G+H C K
Sbjct: 677 LSSKQFREVIREKKLCANCLNPHHDIEKCRSYRSCAYCMGKHHSGACPK 725
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 263 LFSYRVFEYIPPLQQCFKCFKFNHSAKICNSKQKCSICGGEHLYKECDK 409
L S + E I + C C +H + C S + C+ C G+H C K
Sbjct: 677 LSSKQFREVIREKKLCANCLNPHHDIEKCRSYRSCAYCMGKHHSGACPK 725
>AF003142-2|AAB54190.1| 412|Caenorhabditis elegans Hypothetical
protein F57C9.7 protein.
Length = 412
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 225 SYLIFYQTMFNTTYSLIEFLNIYHHCNNVSNVSSLTTQLKYVTVNKNVLFVEVSTYTRNV 404
++L+F+Q+ FN S I+FLN + S L +++ K++ V+V NV
Sbjct: 311 THLVFFQSTFNAHESSIKFLNNVANSKKQERDSKLMKEIRERIKQKSLGHVDVPIDYTNV 370
Query: 405 TS 410
S
Sbjct: 371 ES 372
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 359 QKCSICGGEHLYKECDKPTEICCTNCSG 442
+ C CG + ++ C+KP + C CSG
Sbjct: 2828 ETCGSCGTQQRFRSCNKPVDTC--TCSG 2853
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 359 QKCSICGGEHLYKECDKPTEICCTNCSG 442
+ C CG + ++ C+KP + C CSG
Sbjct: 2828 ETCGSCGTQQRFRSCNKPVDTC--TCSG 2853
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 359 QKCSICGGEHLYKECDKPTEICCTNCSG 442
+ C CG + ++ C+KP + C CSG
Sbjct: 2828 ETCGSCGTQQRFRSCNKPVDTC--TCSG 2853
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 359 QKCSICGGEHLYKECDKPTEICCTNCSG 442
+ C CG + ++ C+KP + C CSG
Sbjct: 2828 ETCGSCGTQQRFRSCNKPVDTC--TCSG 2853
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 365 CSICGGE-HLYKECDKP--TEICCTNC 436
C CG E H+ KECDKP C NC
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNC 598
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +2
Query: 365 CSICGGE-HLYKECDKP--TEICCTNC 436
C CG E H+ KECDKP C NC
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNC 598
>U64600-5|AAK39202.2| 223|Caenorhabditis elegans C.elegans homeobox
protein 31 protein.
Length = 223
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +2
Query: 590 YNTVNKSVYN-SVNKPLYNSVNKPVNTHVDNVNKQQDLLPL---ENIKNQIVS 736
Y + N S++ S N+P++NS+ P ++ + N Q LL +N+K+ I S
Sbjct: 145 YLSQNTSMFGASNNRPVFNSLVVPTSSMIPASNSQNSLLQFLASQNVKDDISS 197
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 29.1 bits (62), Expect = 3.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQKCSICGGEH 388
CF C + H C+ + C+ C G H
Sbjct: 348 CFGCLRSGHQRSKCSRPRTCNHCKGNH 374
>AF016436-3|AAC25896.1| 331|Caenorhabditis elegans Serpentine
receptor, class j protein40 protein.
Length = 331
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +3
Query: 228 YLIFYQTMFNTTYSLIEFLNIYHHCNNVSNVSSLTTQLKYVTVNKNVLFVEVSTYTRNVT 407
+L+ Y +FN TYS++ N V + +T + Y+ + ++ FVE+S + ++
Sbjct: 42 FLLLYFALFNLTYSIV---------NIVVPIDIITYRYSYMVILRDGWFVELSDFNFSLL 92
Query: 408 SPLKFVVQIAADLILP--FQKYVQLK*RKLWKKN 503
S +V LIL +Y+ ++ L ++N
Sbjct: 93 SARCSLVGATFALILVHFVYRYLAIQNSSLTREN 126
>AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical
protein H24K24.4 protein.
Length = 603
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 20 SFLEKYDMRAFIPAAQIEKTGIIRFVPANISNKE 121
+ ++ YD + FI +AQ+ T + F PAN N E
Sbjct: 81 NLVDGYDYKKFILSAQLAATEVKSFRPANPENTE 114
>Z83223-3|CAB05717.2| 385|Caenorhabditis elegans Hypothetical
protein E01G4.5 protein.
Length = 385
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 308 CFKCFKFNHSAKICNSKQKCSICGGEHLYKEC-DKPTEICCTNCS 439
C KC++F N ++KC CG + EC + ++ C C+
Sbjct: 286 CDKCYQFVEKNHAKNCEKKCRSCG----HFECGQQEKDVVCDTCN 326
>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
protein C36B1.8b protein.
Length = 1052
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 365 CSICGGEHLYKECDKPT 415
CS CGG H K C+K T
Sbjct: 919 CSNCGGPHAPKHCEKQT 935
>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
protein C36B1.8a protein.
Length = 1049
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 365 CSICGGEHLYKECDKPT 415
CS CGG H K C+K T
Sbjct: 916 CSNCGGPHAPKHCEKQT 932
>U50300-6|AAC48109.1| 642|Caenorhabditis elegans Hypothetical
protein R03H4.1 protein.
Length = 642
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +2
Query: 515 YASATSTKQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTHVDNVNKQQ 694
Y+S+ ++ N+D+ + Y ++ K +Y + PLYN +N +NT + + +
Sbjct: 496 YSSSLQSRIRKNDDYIHQMSENIQFYESIAKKIYILGSHPLYN-INH-LNTFLHYLIQNS 553
Query: 695 DLLPLENIKNQIVSNNDV 748
D L ++ N+ S++D+
Sbjct: 554 DELESLHL-NRFKSDDDM 570
>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
protein 1 protein.
Length = 1010
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 512 TYASATSTKQVNNN-DFPPLPTSKTPVYNTVNKSVYNSVNK 631
T+ T Q+ NN D + TSK Y+ N S+ S++K
Sbjct: 647 TFQGHNETSQIMNNVDSEAVNTSKISTYSAFNLSINQSISK 687
>AF039039-4|AAB94177.2| 591|Caenorhabditis elegans Hypothetical
protein T08B1.1 protein.
Length = 591
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -1
Query: 237 ILDKKVMLTVCKGTCSCPTFFVNLLIAIISYIDDSLLYNSLLEM 106
IL V+ V GTC+ + VN+L+ + + I+D + + +++++
Sbjct: 404 ILFGVVIALVATGTCTYDSKAVNILVIVTTMINDCIFWINIVQI 447
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,511,277
Number of Sequences: 27780
Number of extensions: 337973
Number of successful extensions: 1246
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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