Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16c01
(789 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 25 0.61
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 24 1.4
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 24 1.9
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 23 3.2
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 23 3.2
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 23 3.2
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 23 3.2
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 23 3.2
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 23 3.2
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 23 3.2
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 23 3.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.3
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 22 5.7
EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate isome... 22 7.5
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 22 7.5
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 9.9
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 9.9
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 9.9
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 9.9
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 25.4 bits (53), Expect = 0.61
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 521 SATSTKQV-NNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVN 652
S+ S K + NNN++ + YN N + YN+ K YN +N
Sbjct: 316 SSLSNKTIHNNNNYNNNNYNNN--YNNYNNNNYNNYKKLYYNIIN 358
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 24.2 bits (50), Expect = 1.4
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 536 KQVNNNDFPPLPTSKTPVYNTVNKSVYNSVNKPLYNSVNKPVNTHVDNVNKQQDLLPL 709
K+ + P + +S + Y N + YN+ N YN+ NK + +N +Q +P+
Sbjct: 304 KERERSKEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINIEQIPVPV 361
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 23.8 bits (49), Expect = 1.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 234 IFYQTMFNTTYSLIEFLNIYHHCNNVSNVSSLTTQLKYVTVNKNV 368
IF T+F +Y + L IY++ VS+V + L+ NV
Sbjct: 210 IFVATIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNV 254
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 23.0 bits (47), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 593 NTVNKSVYNSVNKPLYNSVN 652
N N + YN+ KPLY ++N
Sbjct: 87 NNYNYNNYNNNYKPLYYNIN 106
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 23.0 bits (47), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 593 NTVNKSVYNSVNKPLYNSVN 652
N N + YN+ KPLY ++N
Sbjct: 87 NNYNYNNYNNNYKPLYYNIN 106
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 23.0 bits (47), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 593 NTVNKSVYNSVNKPLYNSVN 652
N N + YN+ KPLY ++N
Sbjct: 87 NNYNYNNYNNNYKPLYYNIN 106
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 23.0 bits (47), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 593 NTVNKSVYNSVNKPLYNSVN 652
N N + YN+ KPLY ++N
Sbjct: 87 NNYNYNNYNNNYKPLYYNIN 106
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.0 bits (47), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 593 NTVNKSVYNSVNKPLYNSVN 652
N N + YN+ KPLY ++N
Sbjct: 320 NNYNYNNYNNNYKPLYYNIN 339
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.0 bits (47), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 593 NTVNKSVYNSVNKPLYNSVN 652
N N + YN+ KPLY ++N
Sbjct: 320 NNYNYNNYNNNYKPLYYNIN 339
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.0 bits (47), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 593 NTVNKSVYNSVNKPLYNSVN 652
N N + YN+ KPLY ++N
Sbjct: 320 NNYNYNNYNNNYKPLYYNIN 339
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 23.0 bits (47), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 593 NTVNKSVYNSVNKPLYNSVN 652
N N + YN+ KPLY ++N
Sbjct: 309 NNYNYNNYNNNYKPLYYNIN 328
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 109 NVSWNESYYSSLFNLR 62
N+ WNES Y + +LR
Sbjct: 47 NLQWNESEYGGVKDLR 62
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 109 NVSWNESYYSSLFNLR 62
N+ WNES Y + +LR
Sbjct: 47 NLQWNESEYGGVKDLR 62
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 109 NVSWNESYYSSLFNLR 62
N+ WNES Y + +LR
Sbjct: 47 NLQWNESEYGGVKDLR 62
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 109 NVSWNESYYSSLFNLR 62
N+ WNES Y + +LR
Sbjct: 47 NLQWNESEYGGVKDLR 62
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 109 NVSWNESYYSSLFNLR 62
N+ WNES Y + +LR
Sbjct: 47 NLQWNESEYGGVKDLR 62
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 109 NVSWNESYYSSLFNLR 62
N+ WNES Y + +LR
Sbjct: 47 NLQWNESEYGGVKDLR 62
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 109 NVSWNESYYSSLFNLR 62
N+ WNES Y + +LR
Sbjct: 115 NLQWNESEYGGVKDLR 130
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 109 NVSWNESYYSSLFNLR 62
N+ WNES Y + +LR
Sbjct: 115 NLQWNESEYGGVKDLR 130
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 22.2 bits (45), Expect = 5.7
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 704 PLENIKNQIVSNNDVL 751
P +NI+N ++SN D +
Sbjct: 32 PNDNIRNTLISNGDYI 47
>EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate
isomerase protein.
Length = 247
Score = 21.8 bits (44), Expect = 7.5
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +2
Query: 197 VPLQTVSITFLSNILPDNV 253
V + ++ +T+ NILP+N+
Sbjct: 40 VGVPSIYLTYAKNILPNNI 58
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 21.8 bits (44), Expect = 7.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 321 SSLTTQLKYVTVNKNVLF-VEVSTYTRNVTSPLKFVVQI 434
SSL LKY V NV F + T + ++P +F V I
Sbjct: 302 SSLENTLKYYEVGSNVPFNFKFITDANSSSTPEQFKVII 340
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.4 bits (43), Expect = 9.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 186 DMSMFLYKL*ALLSYLIFYQTMFNTTYSLIEFLNIYHHCNNV 311
D S Y++ LL + + + S EFLN HH +++
Sbjct: 101 DESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDI 142
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.4 bits (43), Expect = 9.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 186 DMSMFLYKL*ALLSYLIFYQTMFNTTYSLIEFLNIYHHCNNV 311
D S Y++ LL + + + S EFLN HH +++
Sbjct: 101 DESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDI 142
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.4 bits (43), Expect = 9.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 186 DMSMFLYKL*ALLSYLIFYQTMFNTTYSLIEFLNIYHHCNNV 311
D S Y++ LL + + + S EFLN HH +++
Sbjct: 152 DESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDI 193
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.4 bits (43), Expect = 9.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 186 DMSMFLYKL*ALLSYLIFYQTMFNTTYSLIEFLNIYHHCNNV 311
D S Y++ LL + + + S EFLN HH +++
Sbjct: 101 DESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDI 142
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,344
Number of Sequences: 438
Number of extensions: 4711
Number of successful extensions: 35
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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