Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b24
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    29   1.1  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    28   2.0  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    27   3.5  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   4.6  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   4.6  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    26   6.1  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    26   8.0  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 657 HG-YNLLEFAKAEISSFLQRNNVKDLIFIPYAQNDFDG 547
           HG Y++LE + AEI   ++R   KD I +    ND +G
Sbjct: 407 HGLYSILETSGAEIVGDIKRAQEKDTIILAQPDNDQEG 444


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 362 ILLFINWTKLFLYNLFKSKKVFPPPIKIALDSLIAVSGLGYV 487
           ++L+ N   +   NL  ++ V+PPP K  L  L+A+   G V
Sbjct: 224 LILYTNSESIPKLNLRSNELVYPPPSKDLLQKLLALEKDGQV 265


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 505 ESPLIYNILYFSSIAIKVILSIRNEY*ILDIVPLEETGDFR 627
           E  ++Y +L  SS+   +I ++RNE  +L ++P  E  DFR
Sbjct: 143 ELEILY-LLRGSSVIAPLITALRNEDQVLVVLPYYEHTDFR 182


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 333 SSAGTNVATKSIHTTNDMPIIYPPS 259
           SSA T  +T S+ +TN   I+ PPS
Sbjct: 50  SSASTETSTHSVTSTNITSIVPPPS 74


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 336 GSSAGTNVATKSIHTTNDMPIIYPPSFEAIGIVP 235
           GSSAG N+A    H     P  +PP    + +VP
Sbjct: 179 GSSAGGNIAAVLSHKVAASPANFPPLVLQLLVVP 212


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 378 LMKSKIDDGSLIYIGSSAGTNVATKSIHTTNDMPIIYPPSFEAIGI 241
           +M  KI D +   +G   G     K I    ++P+ +P  FE++GI
Sbjct: 134 MMVEKIPDSTYEMVG---GLEKQIKEIKEVIELPVKHPELFESLGI 176


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 318 NVATKSIHTTN-DMPIIYPPSFEAIGIVPFNI 226
           N++T+S       +P+I PPSF     + FN+
Sbjct: 432 NISTESPSVAMPSIPVIQPPSFPIFSSIDFNV 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,503,420
Number of Sequences: 5004
Number of extensions: 72686
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)