Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16b24
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448... 29 3.7
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 29 3.7
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 29 3.7
01_05_0168 - 18865821-18866843 29 4.8
08_02_1176 + 24931728-24931877,24933175-24933275,24934410-249347... 29 6.4
03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596... 29 6.4
01_07_0113 + 41158666-41159615,41159695-41160076 29 6.4
07_01_1180 - 11188789-11188797,11189032-11189068,11190328-111903... 28 8.5
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 28 8.5
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 28 8.5
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 8.5
>08_02_0099 +
12343518-12343678,12344193-12344393,12344669-12344846,
12347201-12347463,12347596-12347874,12348045-12349182,
12349303-12349473
Length = 796
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/48 (29%), Positives = 18/48 (37%)
Frame = -1
Query: 724 NILKLFHYGISSSSTFAVIIQLPWIQSFRICQSGNLQFPPKEQCQGFN 581
N KL + S T + LPW+ R C + PP C N
Sbjct: 364 NAHKLLLAAVVSILTSCCVFGLPWLAPCRPCPTAGAPSPPNGTCHSLN 411
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 387 LVQLMK-SKIDDGSLIYIGSSAGTNVATKSIHTTNDMPIIYPPSFEAIGI 241
LV LMK K+ D + IG G + K I ++PI +P FE++GI
Sbjct: 173 LVNLMKVEKVPDSTYDMIG---GLDQQIKEIKEVIELPIKHPELFESLGI 219
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 387 LVQLMK-SKIDDGSLIYIGSSAGTNVATKSIHTTNDMPIIYPPSFEAIGI 241
LV LMK K+ D + IG G + K I ++PI +P FE++GI
Sbjct: 151 LVNLMKVEKVPDSTYDMIG---GLDQQIKEIKEVIELPIKHPELFESLGI 197
>01_05_0168 - 18865821-18866843
Length = 340
Score = 29.1 bits (62), Expect = 4.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 774 CWVKNDIRFKCDRPCYH 824
CW ++D FK RPC+H
Sbjct: 223 CWPRSDEVFKATRPCHH 239
>08_02_1176 +
24931728-24931877,24933175-24933275,24934410-24934788,
24935509-24936354,24936555-24936642,24936947-24937039,
24937221-24937318,24937364-24937470,24938266-24938353,
24938748-24939005
Length = 735
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 609 GNWRFPLWQILKDCIHGSWMMTAKVLDDEMP 701
GN FPL +LKD +HG + KV + P
Sbjct: 159 GNENFPLRSVLKDILHGEEKRSQKVNEIRHP 189
>03_02_0154 +
5967512-5967658,5968206-5968652,5968766-5968846,
5969058-5969075,5969552-5969748,5969844-5969943,
5970676-5970861
Length = 391
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 777 NINNQFSELLTYPLNCKKTYSNSSI 703
NI N F ELL +P+NCK + NS I
Sbjct: 213 NIYN-FGELLAHPINCKASKINSLI 236
>01_07_0113 + 41158666-41159615,41159695-41160076
Length = 443
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 333 SSAGTNVATKSIHTTNDMPIIYPPSFEAIG 244
S+ T S +TTN ++YP SF A+G
Sbjct: 130 STGDLTTFTMSANTTNGTDLLYPESFTAVG 159
>07_01_1180 -
11188789-11188797,11189032-11189068,11190328-11190392,
11190464-11190562,11190707-11190878,11190973-11191325,
11191451-11191561,11191637-11191708,11192203-11192420,
11192546-11192594,11192697-11192750,11192876-11192958,
11193088-11193304,11193387-11193510,11194042-11194105,
11194413-11194500,11194623-11194724,11194842-11194937
Length = 670
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 267 PPSFEAIGIVPFNINPHYIDKVENEEHKGETRDQRIAEYLE 145
P I+P +++ + D +N+E+ E +DQ I LE
Sbjct: 358 PTELNKTKIIPLDLSQNLYDLSQNQENNSENKDQLIMVTLE 398
>03_01_0392 +
3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 612 NWRFPLWQILKDCIHGSWMMTAKVLDD 692
N FPLW ILKDC + +DD
Sbjct: 279 NILFPLWNILKDCFNCEEQAHGGCIDD 305
>02_05_0046 -
25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 231 NINPHYIDKVENEEHK--GETRDQRIAEYLEMQHAAPVLGLK 112
+++P +D++ N + ETR A+ + QH +LGL+
Sbjct: 537 DLSPELVDQIRNRQRNFDTETRSGAAAKLKQNQHTTAILGLR 578
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -2
Query: 201 ENEEHKGETRDQRIAEYLEMQHAAPVLGLKEGAILHV---DGSKLILKG 64
E + G +D ++E+ ++H P G EGA + V DGS L+++G
Sbjct: 131 EGGDGGGNAQDVGVSEHGSLEHVNPGPGDGEGATIPVTGADGSGLLIEG 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,205,755
Number of Sequences: 37544
Number of extensions: 418144
Number of successful extensions: 1021
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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