Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16b24
(871 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118855-1|AAM50715.1| 240|Drosophila melanogaster GM21150p pro... 240 2e-63
AE014298-1844|AAF48224.1| 240|Drosophila melanogaster CG2200-PA... 240 2e-63
AY118648-1|AAM50017.1| 482|Drosophila melanogaster SD05512p pro... 33 0.68
AE014134-1490|AAS64738.1| 482|Drosophila melanogaster CG13384-P... 33 0.68
AE014134-1489|AAF52661.1| 483|Drosophila melanogaster CG13384-P... 33 0.68
AE014134-1488|AAN10664.1| 483|Drosophila melanogaster CG13384-P... 33 0.68
AE014134-1487|AAN10663.1| 483|Drosophila melanogaster CG13384-P... 33 0.68
AE014134-1486|AAF52663.1| 486|Drosophila melanogaster CG13384-P... 33 0.68
AE014134-1485|AAF52662.2| 504|Drosophila melanogaster CG13384-P... 33 0.68
AF132183-1|AAD34771.1| 834|Drosophila melanogaster unknown prot... 30 3.6
AE014297-2518|AAF55551.2| 834|Drosophila melanogaster CG18617-P... 30 3.6
AE014297-2517|AAF55552.2| 834|Drosophila melanogaster CG18617-P... 30 3.6
>AY118855-1|AAM50715.1| 240|Drosophila melanogaster GM21150p
protein.
Length = 240
Score = 240 bits (587), Expect = 2e-63
Identities = 111/220 (50%), Positives = 146/220 (66%)
Frame = -2
Query: 702 MASRRQAXXXXXSNCHGYNLLEFAKAEISSFLQRNNVKDLIFIPYAQNDFDGYTTKIKNV 523
MAS R S HG+ LE A+ ++ + NVK ++F+PYA D D YT +++
Sbjct: 1 MASARNLLLLSSSRLHGHGYLEHARGQLEDLFKSANVKTVLFVPYALRDHDKYTATVRDA 60
Query: 522 IDQWGFTVTGLHTYPKPETAISESKAIFIGGGNTFLLLKRLYKNNLVQLMKSKIDDGSLI 343
+ WGF V GLHT P E A+ E++AIF+GGGNTF+LL+ LY+ L+ ++ + L
Sbjct: 61 LQPWGFNVEGLHTKPDREQALREAQAIFVGGGNTFVLLRSLYEMKLLDPIRELVLQRGLP 120
Query: 342 YIGSSAGTNVATKSIHTTNDMPIIYPPSFEAIGIVPFNINPHYIDKVENEEHKGETRDQR 163
Y+GSSAGTNVAT+SIHTTNDMP+ YPPSFEA+ +VPFNINPHY+D HKGETRD+R
Sbjct: 121 YVGSSAGTNVATRSIHTTNDMPVAYPPSFEALALVPFNINPHYLDPEAGSRHKGETRDER 180
Query: 162 IAEYLEMQHAAPVLGLKEGAILHVDGSKLILKGVNGAVLF 43
+ E++ H PVLGL+EG + V G K IL G A LF
Sbjct: 181 LEEFV-AYHGLPVLGLREGTSVRVQGEKAILLGDRNAKLF 219
>AE014298-1844|AAF48224.1| 240|Drosophila melanogaster CG2200-PA
protein.
Length = 240
Score = 240 bits (587), Expect = 2e-63
Identities = 111/220 (50%), Positives = 146/220 (66%)
Frame = -2
Query: 702 MASRRQAXXXXXSNCHGYNLLEFAKAEISSFLQRNNVKDLIFIPYAQNDFDGYTTKIKNV 523
MAS R S HG+ LE A+ ++ + NVK ++F+PYA D D YT +++
Sbjct: 1 MASARNLLLLSSSRLHGHGYLEHARGQLEDLFKSANVKTVLFVPYALRDHDKYTATVRDA 60
Query: 522 IDQWGFTVTGLHTYPKPETAISESKAIFIGGGNTFLLLKRLYKNNLVQLMKSKIDDGSLI 343
+ WGF V GLHT P E A+ E++AIF+GGGNTF+LL+ LY+ L+ ++ + L
Sbjct: 61 LQPWGFNVEGLHTKPDREQALREAQAIFVGGGNTFVLLRSLYEMKLLDPIRELVLQRGLP 120
Query: 342 YIGSSAGTNVATKSIHTTNDMPIIYPPSFEAIGIVPFNINPHYIDKVENEEHKGETRDQR 163
Y+GSSAGTNVAT+SIHTTNDMP+ YPPSFEA+ +VPFNINPHY+D HKGETRD+R
Sbjct: 121 YVGSSAGTNVATRSIHTTNDMPVAYPPSFEALALVPFNINPHYLDPEAGSRHKGETRDER 180
Query: 162 IAEYLEMQHAAPVLGLKEGAILHVDGSKLILKGVNGAVLF 43
+ E++ H PVLGL+EG + V G K IL G A LF
Sbjct: 181 LEEFV-AYHGLPVLGLREGTSVRVQGEKAILLGDRNAKLF 219
>AY118648-1|AAM50017.1| 482|Drosophila melanogaster SD05512p
protein.
Length = 482
Score = 32.7 bits (71), Expect = 0.68
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 302 LFVATFVPALLPMYIKLPSSILLFINWTKLFLYNLFKSKKVFPPPIKIALDSLIAVSGL 478
LFVA + ++ Y K+P I L I + L NL ++ K P +A +L+ V+GL
Sbjct: 186 LFVALNIKDVMDHYYKMPVQIYLLIMLGPMILLNLVRNLKYLTPVSLVA--ALLTVAGL 242
>AE014134-1490|AAS64738.1| 482|Drosophila melanogaster CG13384-PG,
isoform G protein.
Length = 482
Score = 32.7 bits (71), Expect = 0.68
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 302 LFVATFVPALLPMYIKLPSSILLFINWTKLFLYNLFKSKKVFPPPIKIALDSLIAVSGL 478
LFVA + ++ Y K+P I L I + L NL ++ K P +A +L+ V+GL
Sbjct: 186 LFVALNIKDVMDHYYKMPVQIYLLIMLGPMILLNLVRNLKYLTPVSLVA--ALLTVAGL 242
>AE014134-1489|AAF52661.1| 483|Drosophila melanogaster CG13384-PF,
isoform F protein.
Length = 483
Score = 32.7 bits (71), Expect = 0.68
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 302 LFVATFVPALLPMYIKLPSSILLFINWTKLFLYNLFKSKKVFPPPIKIALDSLIAVSGL 478
LFVA + ++ Y K+P I L I + L NL ++ K P +A +L+ V+GL
Sbjct: 187 LFVALNIKDVMDHYYKMPVQIYLLIMLGPMILLNLVRNLKYLTPVSLVA--ALLTVAGL 243
>AE014134-1488|AAN10664.1| 483|Drosophila melanogaster CG13384-PE,
isoform E protein.
Length = 483
Score = 32.7 bits (71), Expect = 0.68
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 302 LFVATFVPALLPMYIKLPSSILLFINWTKLFLYNLFKSKKVFPPPIKIALDSLIAVSGL 478
LFVA + ++ Y K+P I L I + L NL ++ K P +A +L+ V+GL
Sbjct: 187 LFVALNIKDVMDHYYKMPVQIYLLIMLGPMILLNLVRNLKYLTPVSLVA--ALLTVAGL 243
>AE014134-1487|AAN10663.1| 483|Drosophila melanogaster CG13384-PD,
isoform D protein.
Length = 483
Score = 32.7 bits (71), Expect = 0.68
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 302 LFVATFVPALLPMYIKLPSSILLFINWTKLFLYNLFKSKKVFPPPIKIALDSLIAVSGL 478
LFVA + ++ Y K+P I L I + L NL ++ K P +A +L+ V+GL
Sbjct: 187 LFVALNIKDVMDHYYKMPVQIYLLIMLGPMILLNLVRNLKYLTPVSLVA--ALLTVAGL 243
>AE014134-1486|AAF52663.1| 486|Drosophila melanogaster CG13384-PB,
isoform B protein.
Length = 486
Score = 32.7 bits (71), Expect = 0.68
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 302 LFVATFVPALLPMYIKLPSSILLFINWTKLFLYNLFKSKKVFPPPIKIALDSLIAVSGL 478
LFVA + ++ Y K+P I L I + L NL ++ K P +A +L+ V+GL
Sbjct: 190 LFVALNIKDVMDHYYKMPVQIYLLIMLGPMILLNLVRNLKYLTPVSLVA--ALLTVAGL 246
>AE014134-1485|AAF52662.2| 504|Drosophila melanogaster CG13384-PC,
isoform C protein.
Length = 504
Score = 32.7 bits (71), Expect = 0.68
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 302 LFVATFVPALLPMYIKLPSSILLFINWTKLFLYNLFKSKKVFPPPIKIALDSLIAVSGL 478
LFVA + ++ Y K+P I L I + L NL ++ K P +A +L+ V+GL
Sbjct: 208 LFVALNIKDVMDHYYKMPVQIYLLIMLGPMILLNLVRNLKYLTPVSLVA--ALLTVAGL 264
>AF132183-1|AAD34771.1| 834|Drosophila melanogaster unknown
protein.
Length = 834
Score = 30.3 bits (65), Expect = 3.6
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = -2
Query: 432 GGNTFLLLKRLYKNNLVQLMKSKIDDGSLIYIGSSAGTNVATKSIHTTNDMPIIYPPSFE 253
GG +LL L+ L+ + + S+ GS N T ++ T ++ + PP+
Sbjct: 445 GGRYIILLMGLFAM-YTGLVYNDVFSKSMNLFGSRWFNNYNTTTVLTNPNLQL--PPNSS 501
Query: 252 AIGIVPFNINP 220
A+G+ PF ++P
Sbjct: 502 AVGVYPFGMDP 512
>AE014297-2518|AAF55551.2| 834|Drosophila melanogaster CG18617-PB,
isoform B protein.
Length = 834
Score = 30.3 bits (65), Expect = 3.6
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = -2
Query: 432 GGNTFLLLKRLYKNNLVQLMKSKIDDGSLIYIGSSAGTNVATKSIHTTNDMPIIYPPSFE 253
GG +LL L+ L+ + + S+ GS N T ++ T ++ + PP+
Sbjct: 445 GGRYIILLMGLFAM-YTGLVYNDVFSKSMNLFGSRWFNNYNTTTVLTNPNLQL--PPNSS 501
Query: 252 AIGIVPFNINP 220
A+G+ PF ++P
Sbjct: 502 AVGVYPFGMDP 512
>AE014297-2517|AAF55552.2| 834|Drosophila melanogaster CG18617-PA,
isoform A protein.
Length = 834
Score = 30.3 bits (65), Expect = 3.6
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = -2
Query: 432 GGNTFLLLKRLYKNNLVQLMKSKIDDGSLIYIGSSAGTNVATKSIHTTNDMPIIYPPSFE 253
GG +LL L+ L+ + + S+ GS N T ++ T ++ + PP+
Sbjct: 445 GGRYIILLMGLFAM-YTGLVYNDVFSKSMNLFGSRWFNNYNTTTVLTNPNLQL--PPNSS 501
Query: 252 AIGIVPFNINP 220
A+G+ PF ++P
Sbjct: 502 AVGVYPFGMDP 512
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,345,450
Number of Sequences: 53049
Number of extensions: 735893
Number of successful extensions: 1608
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4209111660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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