Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b24
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.4  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 384 VQLMKSKIDDGSLIYIGSSAG 322
           VQL+  +++  +L+YIG + G
Sbjct: 188 VQLLSCEVNGSTLVYIGDNEG 208


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 766  IVNVGLRMTFDLNVTGLV 819
            IVN  LR+TF  NV G V
Sbjct: 963  IVNSNLRLTFSKNVQGRV 980


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 815 RPVTFKSNVILNPTLTISSL 756
           RP TF  NV  NP  T+S L
Sbjct: 323 RPATFTCNVRGNPIKTVSWL 342


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 299 ILFVATFVPALLPMYIKLPSSILLFINWTKLFL 397
           I FV +    L+ +YI  PS +++ I+W   +L
Sbjct: 214 IQFVRSMGYYLIQIYI--PSGLIVIISWVSFWL 244


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 299 ILFVATFVPALLPMYIKLPSSILLFINWTKLFL 397
           I FV +    L+ +YI  PS +++ I+W   +L
Sbjct: 214 IQFVRSMGYYLIQIYI--PSGLIVIISWVSFWL 244


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 299 ILFVATFVPALLPMYIKLPSSILLFINWTKLFL 397
           I FV +    L+ +YI  PS +++ I+W   +L
Sbjct: 153 IQFVRSMGYYLIQIYI--PSGLIVIISWVSFWL 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,302
Number of Sequences: 438
Number of extensions: 4750
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)