Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b19
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    33   0.064
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    30   0.45 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.4  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    28   1.4  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    27   2.4  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.6  
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    26   7.4  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    25   9.7  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 32.7 bits (71), Expect = 0.064
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -3

Query: 786 DELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKML 658
           +EL   L  +GE ++  ++  ++   D D DG I+YEEF +++
Sbjct: 105 EELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVI 147



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 786 DELQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKML 658
           +EL   +  +G+  T A+L  ++   D D +G ID+ EF+ M+
Sbjct: 32  NELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMM 74


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = -3

Query: 780 LQAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKMLL 655
           L+   + + E + D +L  ++   D+D DG I+ +EF+ +++
Sbjct: 132 LRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQEFIAIMM 173


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 325  LNVLTLVNTISSAF--TSIYLLGASSLKIHIFIFTLFRKFYNSI-LLKINHNL 474
            LN++       + F  TS+Y L  +S K H   FTL +K  + +  LKI+  L
Sbjct: 1936 LNIVIKYRNFDNIFRETSLYTLTTTSFKTHSQAFTLLQKVVDQLDQLKIHETL 1988


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +1

Query: 229 SVFNNVTIYLLFIR**Q*ILYLGLDILQYIIYLNVLTLVNTISSAFTSIYLLGASSLKIH 408
           +V N  T   LF R  Q +L   L+ +  I+  NV++ V  ++  F     L   +LK  
Sbjct: 121 NVKNVYTTLQLFPR--QDLLAYSLNQIVEILLGNVMSSVLPVADRFQFDLTLADQNLKAE 178

Query: 409 IFIFTLFRKFYNSILLKINHNL 474
            F+F +  K    IL +I ++L
Sbjct: 179 RFVFAIVHKDCMRILREIRYDL 200


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 777 QAALEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEF 670
           +AA  +    ++  +L ++  L DID DG  D++EF
Sbjct: 27  KAAGVLRSSKLSSDKLEKIWDLADIDDDGMFDFDEF 62


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +3

Query: 69   FLFIFYILKLYITYAFVICFLS----IIVILVFYLYKYKII*FRSLS 197
            F+F F  L   +    VIC+ S    I+++ +F+LY+Y  + +   S
Sbjct: 1020 FMFFFRNLFQIVFVLAVICYSSPMFMILIVPLFFLYRYNQVYYTQTS 1066


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = -3

Query: 768 LEMIGEPVTDAQLNQVLALGDIDHDGRIDYEEFVKMLL 655
           ++ +GE ++D ++  ++   D  + G  DY +FV+ ++
Sbjct: 104 MKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIM 141


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -3

Query: 783 ELQAALEM-IGEPVTDAQLNQVLALG----DIDHDGRIDYEEF 670
           EL   L+M +G  + + QL Q++       D D DG+I +EEF
Sbjct: 114 ELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEF 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,938
Number of Sequences: 5004
Number of extensions: 53426
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)