Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b18
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.25 
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   3.0  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   4.0  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    25   5.3  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    24   9.3  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    24   9.3  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    24   9.3  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    24   9.3  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 29.1 bits (62), Expect = 0.25
 Identities = 23/87 (26%), Positives = 39/87 (44%)
 Frame = -3

Query: 371 INWETKLNINFLICV*FKMSKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFRV 192
           I++  K N    + +    + +T  +TLT +    FKV S P +T     L+  ++EF  
Sbjct: 615 ISYLRKSNRAVYVLISSNSTLLTVYVTLTLEGVPDFKVYSNPISTDLPLTLQSPSDEFST 674

Query: 191 DPATSAIITDDGIGINPQQTAGNVFLK 111
             A S  +   GI +  +Q   N  L+
Sbjct: 675 IYAWSDYLYIVGIDMETEQPTLNQILE 701


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 223 TAVNGVASGTLSTLNGSFGSDVSVILKVTFDILNYT 330
           + + G  S T++T  G +G  +    ++  D+L+YT
Sbjct: 241 STILGQCSPTVATAAGEYGRCIGTAFQLMDDVLDYT 276


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 190 STLNSSAANFNTAVNGVASGTLSTLNGS-FGS 282
           +TL S A     A+  +ASGT +  NG  FGS
Sbjct: 348 ATLGSKARAGKLAIEDMASGTFTISNGGIFGS 379


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 265 NGSFGSDVSVILKVTFDILNYTQIKKFMFNFV 360
           +G +  DVS+ L V +D++N T+ +   FN +
Sbjct: 396 SGVYKYDVSLPLPVLYDLVNDTKKRLIEFNLL 427


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 220 NTAVNGVASGTLSTLNGSFGSDVSVILKVTF 312
           NT    V S  LST NG F  +  V    +F
Sbjct: 498 NTPETSVVSKNLSTFNGKFNVNAPVFTPRSF 528


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -3

Query: 248  PEATPFTAVLKFAAEEFRVDPATSAIITDDGIGINPQQTAGNV 120
            PE  P    +KF     R       ++ D  + I PQ+  G V
Sbjct: 1215 PEGWPSHGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIV 1257


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 191 DPATSAIITDDGIGINPQQTAGNVFLKHGSE 99
           DP TS    DD +  NP  T G+  +   SE
Sbjct: 274 DPKTSLNFEDDELVKNPSVTKGHPEIHESSE 304


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 128 GNVFLKHGSELRLIPRDRVGFSLI*VHKYVKSFRYIKKNNLY 3
           G   + +   +RL+   +V    +   K +K F+Y   NNL+
Sbjct: 287 GGTLIDYDGNVRLLEIAQVPPQHVEEFKSIKKFKYFNTNNLW 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,463
Number of Sequences: 5004
Number of extensions: 29872
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)