Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b08
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...   106   4e-24
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    41   3e-04
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    40   6e-04
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    26   8.3  

>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score =  106 bits (255), Expect = 4e-24
 Identities = 70/197 (35%), Positives = 102/197 (51%), Gaps = 13/197 (6%)
 Frame = -2

Query: 867 SLSAKERIPWI------LXXG--LLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYA 712
           SL +K  I W+      +  G  LL   HPR RLDAGT  TMGVG G+AIA+A       
Sbjct: 381 SLKSKRNITWVSEGANTMDRGRQLLEVTHPRGRLDAGTMSTMGVGMGYAIASAF----AH 436

Query: 711 PGKRVICVEGDSAFGFSGMEIETMFRYKLPXXXXXXXXXXXXXGFDKEVMADIQSGGDVT 532
              +++ VEGDSAFGFS ME+ET  R +L              G D +    ++    + 
Sbjct: 437 SSDKIVVVEGDSAFGFSAMELETAIRNQLDLLVIVINNNGVYHGLDTDAYETLRDNHQL- 495

Query: 531 QCTPPTALSGEVRYEKMMELFGETGHLCRTVEDIKEAIKTATAVTDKPSIINILIDPQAN 352
              P TAL   +RY+++ E  G  G   +  ED++ +++ A   T   S+IN+++DP+A 
Sbjct: 496 ---PTTALGTSIRYDQICEACGGKGFFVKNEEDLRSSLRKAWQ-TSSVSLINVMVDPEAA 551

Query: 351 RKPQ-----TFNWLTES 316
           RK Q     TF W++ +
Sbjct: 552 RKLQANNH*TFAWMSST 568


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 36/61 (59%)
 Frame = -2

Query: 804 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 625
           P   + +G  GTMG G   AI A++     AP   VI ++GD++F  +GME+ T+ ++ +
Sbjct: 511 PSSLVTSGGLGTMGFGLPAAIGASV----AAPKDIVIDIDGDASFSMTGMELATVRQFDI 566

Query: 624 P 622
           P
Sbjct: 567 P 567


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = -2

Query: 753 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKLP 622
           G+++ +AM     AP +R I + GD +F  +G EI  M R+KLP
Sbjct: 422 GWSVPSAMGYAVAAPERRTIVMVGDGSFQLTGQEISQMIRHKLP 465


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 571 FIKPIVNSIIVYYDYNYR 624
           FI+PIVN +  Y+D +Y+
Sbjct: 234 FIEPIVNRLAKYFDSSYK 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,448,624
Number of Sequences: 5004
Number of extensions: 68781
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)