Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b08
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0047 + 17557087-17558350,17558396-17558475,17559115-175591...    63   3e-10
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    33   0.40 
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313...    31   1.2  
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180...    30   2.1  
12_01_0413 + 3286897-3286990,3287269-3287432                           29   3.8  
10_07_0128 + 13195958-13196011,13196399-13196407,13197257-131973...    29   3.8  
05_05_0170 + 22913791-22914315,22914418-22914581,22914675-229153...    29   3.8  
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816...    29   3.8  
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887...    29   6.6  
01_06_0785 - 31985455-31988463                                         29   6.6  

>01_05_0047 +
           17557087-17558350,17558396-17558475,17559115-17559149,
           17559545-17559551,17560405-17560719
          Length = 566

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
 Frame = -2

Query: 711 PGKRVICVEGDSAFGFSGMEIE--------------TMFRYKLPXXXXXXXXXXXXXGFD 574
           P + V+ VEGDS FGFS ME+E              T+ RY+LP             G D
Sbjct: 427 PDRLVVAVEGDSGFGFSAMEVEMYMDKRVEDGPSCKTLVRYQLPVVVIVFNNNGVYGG-D 485

Query: 573 KEVMADIQSGGDVTQCTPPTALSGEVRYEKMMELFGETGHLCRTVEDIKEAIKTATAVTD 394
           +    +I   G       PT+      Y KMME FG  G+L  T +++K A+  +     
Sbjct: 486 RRSPDEIT--GPYKDDPAPTSFVPAAGYHKMMEAFGGKGYLVETPDELKSALSESFRAR- 542

Query: 393 KPSIINILIDPQA 355
           KP++IN++IDP A
Sbjct: 543 KPAVINVIIDPYA 555



 Score = 31.9 bits (69), Expect = 0.70
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 868 IIVSEGANTMDIGXRFIAQQSSETQ 794
           ++VSEGANTMD+G   + Q    T+
Sbjct: 394 VVVSEGANTMDVGRAVLVQNEPRTR 418


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
 Frame = +1

Query: 190  NKNKETDAIQPKLGSTVSTTLN----ATKNPVPKH 282
            N + E++A+QPKL  T++ T N    +T NP+P+H
Sbjct: 2282 NNSAESEAVQPKLDITIAETNNDNNLSTINPLPEH 2316


>01_01_0417 -
           3135502-3135672,3135759-3135947,3136037-3136154,
           3136398-3137048,3137146-3137309,3138598-3139098
          Length = 597

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 753 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRY 631
           G+++ A +     A  KRVI   GD +F  +  E+ TM R+
Sbjct: 450 GWSVGATLGYAKAAKDKRVIACIGDGSFQVTAQEVSTMLRW 490


>06_01_0237 -
           1808203-1809159,1809246-1809399,1809488-1809636,
           1809715-1809997,1810087-1810192,1810293-1810383,
           1810779-1811270
          Length = 743

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = -2

Query: 438 EDIKEAIKTATAVTDKPSIINI 373
           ++I+ AIK A AVTDKP++I +
Sbjct: 304 DEIRAAIKEAKAVTDKPTLIKV 325


>12_01_0413 + 3286897-3286990,3287269-3287432
          Length = 85

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 706 TRCIVSAPHC---CCNSEARSYPHSAKCTSI 789
           T C V  PHC    CN++ ++   S KC S+
Sbjct: 35  TECTVETPHCTMDSCNAKCKAEATSRKCNSL 65


>10_07_0128 +
           13195958-13196011,13196399-13196407,13197257-13197337,
           13197375-13197856,13198287-13198323,13198425-13198529
          Length = 255

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 816 LNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICV 688
           L N  R + D    GT+G    ++I A +W  DY   K VI +
Sbjct: 62  LQNDIRVKPDLDALGTLGDAGWYSIRAILWAVDYELPKTVIAL 104


>05_05_0170 +
           22913791-22914315,22914418-22914581,22914675-22915325,
           22915425-22915542,22915635-22915823,22915948-22916118
          Length = 605

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 753 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 634
           G+++ A +     A  KRVI   GD +F  +  ++ TM R
Sbjct: 458 GWSVGATLGYAQAAKDKRVISCIGDGSFQMTAQDVSTMLR 497


>04_03_0092 +
           11079185-11079589,11081319-11081409,11081507-11081612,
           11081694-11081976,11082062-11082210,11083582-11083735,
           11083837-11084793
          Length = 714

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 438 EDIKEAIKTATAVTDKPSIINI 373
           +DI+ AIK A AV DKP++I +
Sbjct: 275 DDIRAAIKEAKAVKDKPTLIKV 296


>03_02_0652 -
           10188076-10188243,10188353-10188541,10188633-10188750,
           10188841-10189491,10189870-10190033,10190137-10190574
          Length = 575

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 753 GFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFR 634
           G+++ A +     A  KRVI   GD +F  +  ++ TM R
Sbjct: 429 GWSVGALLGYAQGAKDKRVIACIGDGSFQVTAQDVSTMIR 468


>01_06_0785 - 31985455-31988463
          Length = 1002

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 726 CRDYAPGKRVICVEGDSAFGFSGMEIETMFRY 631
           CR    GK + C+ G+S  G + + +E  +R+
Sbjct: 464 CRKILYGKGIACISGESGIGKTDLVLEYAYRF 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,595,743
Number of Sequences: 37544
Number of extensions: 422565
Number of successful extensions: 985
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)