Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16b08
(892 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001627-1|AAH01627.1| 578|Homo sapiens 2-hydroxyacyl-CoA lyase... 175 2e-43
AJ131753-1|CAB60200.1| 578|Homo sapiens 2-hydroxyphytanoyl-CoA ... 173 5e-43
AK125241-1|BAC86096.1| 569|Homo sapiens protein ( Homo sapiens ... 106 1e-22
U61263-1|AAC50934.1| 632|Homo sapiens acetolactate synthase hom... 60 1e-08
BC011761-1|AAH11761.1| 632|Homo sapiens ilvB (bacterial acetola... 60 1e-08
BC011722-1|AAH11722.1| 632|Homo sapiens ilvB (bacterial acetola... 60 1e-08
AC004794-3|AAC18916.1| 393|Homo sapiens Acetolactate synthase p... 60 1e-08
AC003956-1|AAB94632.1| 632|Homo sapiens acetolactate synthase p... 60 1e-08
BC110508-1|AAI10509.1| 1248|Homo sapiens DKFZP586P0123 protein p... 30 9.8
AK125894-1|BAC86334.1| 1224|Homo sapiens rp86). protein. 30 9.8
AB231764-1|BAE17137.1| 1963|Homo sapiens hypothetical protein pr... 30 9.8
>BC001627-1|AAH01627.1| 578|Homo sapiens 2-hydroxyacyl-CoA lyase 1
protein.
Length = 578
Score = 175 bits (425), Expect = 2e-43
Identities = 85/169 (50%), Positives = 112/169 (66%)
Frame = -2
Query: 822 LLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIET 643
+L N PRHRLDAGTFGTMGVG GFAIAAA+ +D +PG+ +ICVEGDSAFGFSGME+ET
Sbjct: 408 VLQNYLPRHRLDAGTFGTMGVGLGFAIAAAVVAKDRSPGQWIICVEGDSAFGFSGMEVET 467
Query: 642 MFRYKLPXXXXXXXXXXXXXGFDKEVMADIQSGGDVTQCTPPTALSGEVRYEKMMELFGE 463
+ RY LP GFD + ++ D T PP L YE++M FG
Sbjct: 468 ICRYNLPIILLVVNNNGIYQGFDTDTWKEMLKFQDATAVVPPMCLLPNSHYEQVMTAFGG 527
Query: 462 TGHLCRTVEDIKEAIKTATAVTDKPSIINILIDPQANRKPQTFNWLTES 316
G+ +T E+++++++ + A T KPS+INI+I+PQA RK Q F+WLT S
Sbjct: 528 KGYFVQTPEELQKSLRQSLADTTKPSLINIMIEPQATRKAQDFHWLTRS 576
>AJ131753-1|CAB60200.1| 578|Homo sapiens 2-hydroxyphytanoyl-CoA
lyase protein.
Length = 578
Score = 173 bits (422), Expect = 5e-43
Identities = 85/169 (50%), Positives = 111/169 (65%)
Frame = -2
Query: 822 LLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIET 643
+L N PRHRLDAGTFGTMGVG GFAIAAA+ +D +PG +ICVEGDSAFGFSGME+ET
Sbjct: 408 VLQNYLPRHRLDAGTFGTMGVGLGFAIAAAVVAKDRSPGHWIICVEGDSAFGFSGMEVET 467
Query: 642 MFRYKLPXXXXXXXXXXXXXGFDKEVMADIQSGGDVTQCTPPTALSGEVRYEKMMELFGE 463
+ RY LP GFD + ++ D T PP L YE++M FG
Sbjct: 468 ICRYNLPIILLVVNNNGIYQGFDTDTWKEMLKFQDATAVVPPMCLLPNSHYEQVMTAFGG 527
Query: 462 TGHLCRTVEDIKEAIKTATAVTDKPSIINILIDPQANRKPQTFNWLTES 316
G+ +T E+++++++ + A T KPS+INI+I+PQA RK Q F+WLT S
Sbjct: 528 KGYFVQTPEELQKSLEQSLADTTKPSLINIMIEPQATRKAQDFHWLTRS 576
>AK125241-1|BAC86096.1| 569|Homo sapiens protein ( Homo sapiens
cDNA FLJ43251 fis, clone HEART2006131, weakly similar
to Mus musculus 2-hydroxyphytanoyl-CoA lyase
(Hpcl-pending). ).
Length = 569
Score = 106 bits (254), Expect = 1e-22
Identities = 63/166 (37%), Positives = 89/166 (53%), Gaps = 1/166 (0%)
Frame = -2
Query: 810 NHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRY 631
+ PRHRLDAGT TMGVG G+AI A + Y KRV+ + GDSAFGFS ME+ET R
Sbjct: 408 HEPRHRLDAGTGATMGVGMGYAIGAQSY---YGDAKRVVSIVGDSAFGFSAMELETAIRS 464
Query: 630 KLPXXXXXXXXXXXXXGF-DKEVMADIQSGGDVTQCTPPTALSGEVRYEKMMELFGETGH 454
+LP G D+E A ++ G P T+LS E RY+ + E G G
Sbjct: 465 RLPLLIIVINNNGIYHGLEDEEYHAALKDG-----TLPTTSLSVETRYDLISEACGGKGW 519
Query: 453 LCRTVEDIKEAIKTATAVTDKPSIINILIDPQANRKPQTFNWLTES 316
+ ++ +A+K A A D+ ++N++I P R F W+ ++
Sbjct: 520 FVKNRVELAKAVKEALAAKDQTCVVNVMIAP-GGRTKLDFGWMQKT 564
>U61263-1|AAC50934.1| 632|Homo sapiens acetolactate synthase
homolog protein.
Length = 632
Score = 60.1 bits (139), Expect = 1e-08
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = -2
Query: 804 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 625
P LD G FGT+GVG GFA+ A + CR P V C+ GD AFG+S +E +T R+K+
Sbjct: 484 PLRWLDPGAFGTLGVGAGFALGAKL-CR---PDAEVWCLFGDGAFGYSLIEFDTFVRHKI 539
Query: 624 P 622
P
Sbjct: 540 P 540
>BC011761-1|AAH11761.1| 632|Homo sapiens ilvB (bacterial
acetolactate synthase)-like protein.
Length = 632
Score = 60.1 bits (139), Expect = 1e-08
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = -2
Query: 804 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 625
P LD G FGT+GVG GFA+ A + CR P V C+ GD AFG+S +E +T R+K+
Sbjct: 484 PLRWLDPGAFGTLGVGAGFALGAKL-CR---PDAEVWCLFGDGAFGYSLIEFDTFVRHKI 539
Query: 624 P 622
P
Sbjct: 540 P 540
>BC011722-1|AAH11722.1| 632|Homo sapiens ilvB (bacterial
acetolactate synthase)-like protein.
Length = 632
Score = 60.1 bits (139), Expect = 1e-08
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = -2
Query: 804 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 625
P LD G FGT+GVG GFA+ A + CR P V C+ GD AFG+S +E +T R+K+
Sbjct: 484 PLRWLDPGAFGTLGVGAGFALGAKL-CR---PDAEVWCLFGDGAFGYSLIEFDTFVRHKI 539
Query: 624 P 622
P
Sbjct: 540 P 540
>AC004794-3|AAC18916.1| 393|Homo sapiens Acetolactate synthase
protein.
Length = 393
Score = 60.1 bits (139), Expect = 1e-08
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = -2
Query: 804 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 625
P LD G FGT+GVG GFA+ A + CR P V C+ GD AFG+S +E +T R+K+
Sbjct: 245 PLRWLDPGAFGTLGVGAGFALGAKL-CR---PDAEVWCLFGDGAFGYSLIEFDTFVRHKI 300
Query: 624 P 622
P
Sbjct: 301 P 301
>AC003956-1|AAB94632.1| 632|Homo sapiens acetolactate synthase
protein.
Length = 632
Score = 60.1 bits (139), Expect = 1e-08
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = -2
Query: 804 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 625
P LD G FGT+GVG GFA+ A + CR P V C+ GD AFG+S +E +T R+K+
Sbjct: 484 PLRWLDPGAFGTLGVGAGFALGAKL-CR---PDAEVWCLFGDGAFGYSLIEFDTFVRHKI 539
Query: 624 P 622
P
Sbjct: 540 P 540
>BC110508-1|AAI10509.1| 1248|Homo sapiens DKFZP586P0123 protein
protein.
Length = 1248
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 804 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKR 700
P RL F G+ PG + +WCR Y P R
Sbjct: 373 PVQRLLLSAFSAQGLVPGGGVQFEIWCRYYYPNVR 407
>AK125894-1|BAC86334.1| 1224|Homo sapiens rp86). protein.
Length = 1224
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 804 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKR 700
P RL F G+ PG + +WCR Y P R
Sbjct: 349 PVQRLLLSAFSAQGLVPGGGVQFEIWCRYYYPNVR 383
>AB231764-1|BAE17137.1| 1963|Homo sapiens hypothetical protein
protein.
Length = 1963
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 804 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKR 700
P RL F G+ PG + +WCR Y P R
Sbjct: 1088 PVQRLLLSAFSAQGLVPGGGVQFEIWCRYYYPNVR 1122
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,336,508
Number of Sequences: 237096
Number of extensions: 2411632
Number of successful extensions: 4206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4199
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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