Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b08
         (892 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058683-1|AAL13912.1|  568|Drosophila melanogaster LD40177p pro...   237   1e-62
AE013599-2972|AAF57501.1|  568|Drosophila melanogaster CG11208-P...   237   1e-62

>AY058683-1|AAL13912.1|  568|Drosophila melanogaster LD40177p
           protein.
          Length = 568

 Score =  237 bits (580), Expect = 1e-62
 Identities = 106/169 (62%), Positives = 132/169 (78%)
 Frame = -2

Query: 822 LLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIET 643
           +LLN  PRHRLDAGTFGTMGVGPGFA+AAA++CRD+APGKRV+CVEGDSAFGFSGMEIET
Sbjct: 398 MLLNEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEGDSAFGFSGMEIET 457

Query: 642 MFRYKLPXXXXXXXXXXXXXGFDKEVMADIQSGGDVTQCTPPTALSGEVRYEKMMELFGE 463
           M RYKLP             GFDK+    I+S GD+TQ TPP+AL  +VRYE+MM++FG 
Sbjct: 458 MVRYKLPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITPPSALGVQVRYEEMMKMFGM 517

Query: 462 TGHLCRTVEDIKEAIKTATAVTDKPSIINILIDPQANRKPQTFNWLTES 316
            G+ C  +E ++ A+K A  +TD+P+IIN+ I P ++RKPQ+FNWLTES
Sbjct: 518 KGYFCTEIEQLQAAVKAANQLTDRPTIINVAISPSSDRKPQSFNWLTES 566



 Score = 32.7 bits (71), Expect = 0.70
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -1

Query: 874 DSIIVSEGANTMDIGXRFIAQQ 809
           D+IIVSEGANTMDIG   +  +
Sbjct: 381 DTIIVSEGANTMDIGRSMLLNE 402


>AE013599-2972|AAF57501.1|  568|Drosophila melanogaster CG11208-PA
           protein.
          Length = 568

 Score =  237 bits (580), Expect = 1e-62
 Identities = 106/169 (62%), Positives = 132/169 (78%)
 Frame = -2

Query: 822 LLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIET 643
           +LLN  PRHRLDAGTFGTMGVGPGFA+AAA++CRD+APGKRV+CVEGDSAFGFSGMEIET
Sbjct: 398 MLLNEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEGDSAFGFSGMEIET 457

Query: 642 MFRYKLPXXXXXXXXXXXXXGFDKEVMADIQSGGDVTQCTPPTALSGEVRYEKMMELFGE 463
           M RYKLP             GFDK+    I+S GD+TQ TPP+AL  +VRYE+MM++FG 
Sbjct: 458 MVRYKLPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITPPSALGVQVRYEEMMKMFGM 517

Query: 462 TGHLCRTVEDIKEAIKTATAVTDKPSIINILIDPQANRKPQTFNWLTES 316
            G+ C  +E ++ A+K A  +TD+P+IIN+ I P ++RKPQ+FNWLTES
Sbjct: 518 KGYFCTEIEQLQAAVKAANQLTDRPTIINVAISPSSDRKPQSFNWLTES 566



 Score = 32.7 bits (71), Expect = 0.70
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -1

Query: 874 DSIIVSEGANTMDIGXRFIAQQ 809
           D+IIVSEGANTMDIG   +  +
Sbjct: 381 DTIIVSEGANTMDIGRSMLLNE 402


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,051,074
Number of Sequences: 53049
Number of extensions: 743228
Number of successful extensions: 1392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4352837424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)