Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b08
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...   153   1e-37
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...   153   1e-37
AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical ...    51   1e-06
AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical ...    29   3.4  

>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score =  153 bits (372), Expect = 1e-37
 Identities = 79/163 (48%), Positives = 103/163 (63%)
 Frame = -2

Query: 804 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 625
           P+ RLDAGTFGTMGVG GF++AAA+W RD++P  +V+ V+GDSAFGFS ME+ET+ RY L
Sbjct: 472 PKRRLDAGTFGTMGVGHGFSLAAALWARDHSPKTKVLVVQGDSAFGFSAMELETIARYNL 531

Query: 624 PXXXXXXXXXXXXXGFDKEVMADIQSGGDVTQCTPPTALSGEVRYEKMMELFGETGHLCR 445
           P             G   E    I+  GD T   P  +L+ E RYE+M + FG  G + R
Sbjct: 532 PVVTVIINNSGIYRGLLPEDDKAIE--GDRTLALPVLSLTAECRYEEMCKAFGGAGTVVR 589

Query: 444 TVEDIKEAIKTATAVTDKPSIINILIDPQANRKPQTFNWLTES 316
           TV +IK A++ A   TD P++IN LI   + RKPQ  +WLT S
Sbjct: 590 TVPEIKAALEKAFQKTDGPTVINALISTDSERKPQADHWLTRS 632



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -1

Query: 874 DSIIVSEGANTMDIG 830
           D I+++EGANTMDIG
Sbjct: 449 DVIVINEGANTMDIG 463


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score =  153 bits (372), Expect = 1e-37
 Identities = 79/163 (48%), Positives = 103/163 (63%)
 Frame = -2

Query: 804 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 625
           P+ RLDAGTFGTMGVG GF++AAA+W RD++P  +V+ V+GDSAFGFS ME+ET+ RY L
Sbjct: 472 PKRRLDAGTFGTMGVGHGFSLAAALWARDHSPKTKVLVVQGDSAFGFSAMELETIARYNL 531

Query: 624 PXXXXXXXXXXXXXGFDKEVMADIQSGGDVTQCTPPTALSGEVRYEKMMELFGETGHLCR 445
           P             G   E    I+  GD T   P  +L+ E RYE+M + FG  G + R
Sbjct: 532 PVVTVIINNSGIYRGLLPEDDKAIE--GDRTLALPVLSLTAECRYEEMCKAFGGAGTVVR 589

Query: 444 TVEDIKEAIKTATAVTDKPSIINILIDPQANRKPQTFNWLTES 316
           TV +IK A++ A   TD P++IN LI   + RKPQ  +WLT S
Sbjct: 590 TVPEIKAALEKAFQKTDGPTVINALISTDSERKPQADHWLTRS 632



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -1

Query: 874 DSIIVSEGANTMDIG 830
           D I+++EGANTMDIG
Sbjct: 449 DVIVINEGANTMDIG 463


>AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical
           protein T26C12.1 protein.
          Length = 640

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 27/61 (44%), Positives = 36/61 (59%)
 Frame = -2

Query: 804 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETMFRYKL 625
           P   LD G FGT+GVG GFA+ A    +   P + V  + GD + G+S ME +T  R+KL
Sbjct: 491 PLQWLDPGAFGTLGVGGGFALGA----KTVYPKRPVYIIWGDGSCGYSLMEYDTFARHKL 546

Query: 624 P 622
           P
Sbjct: 547 P 547


>AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical
           protein Y37E3.1 protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 576 DKEVMADIQSGGDVTQCTPPTALSGEVRYEKMME--LFGETGHLCRTVEDIKE 424
           D+E  A IQ GG+  Q   PT +S    Y+   +  L  E G +   +ED  E
Sbjct: 25  DEEAAAVIQKGGEFIQEILPTIISTSRAYDTNQKALLLAEGGKMYNVLEDYNE 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,104,635
Number of Sequences: 27780
Number of extensions: 392005
Number of successful extensions: 916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)