Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b06
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    31   0.18 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    30   0.31 
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    29   0.72 
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    27   2.2  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    27   2.2  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    27   2.9  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    27   2.9  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    27   2.9  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.9  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   5.1  

>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 745 YTFAAVTLYGVLYTALWVPETKGKSLQEIQKFWTKS 638
           Y FA+  L G     L+V ETKG++L+EI   +  +
Sbjct: 405 YIFASCNLTGAAIIFLFVHETKGRTLEEINTMYASN 440


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 745 YTFAAVTLYGVLYTALWVPETKGKSLQEIQKFW 647
           Y FA+  L G +   L+  ETKG +L+EI + +
Sbjct: 439 YVFASCNLTGAIVIFLFAKETKGLTLEEINELY 471


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 745 YTFAAVTLYGVLYTALWVPETKGKSLQEIQKFW 647
           Y FAA  L   +   L+  ETKG +L+EI + +
Sbjct: 437 YVFAACNLCAAIIIFLFAKETKGLTLEEINQLY 469


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 751 VFYTFAAVTLYGVLYTALWVPETKGKSLQEIQK 653
           V + F      G+L+T L +PETKG+   EI +
Sbjct: 515 VMWIFCGCMWGGILFTLL-LPETKGRDADEIDR 546


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 751 VFYTFAAVTLYGVLYTALWVPETKGKSLQEIQK 653
           V + F      G+L+T L +PETKG+   EI +
Sbjct: 516 VMWIFCGCMWGGILFTLL-LPETKGRDADEIDR 547


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 745 YTFAAVTLYGVLYTALWVPETKGKSLQEIQKFW 647
           Y FA+  L   + T L+  E+KG +L+EI + +
Sbjct: 435 YIFASCNLCASIVTFLFAHESKGLTLEEINELY 467


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 745 YTFAAVTLYGVLYTALWVPETKGKSLQEIQKFW 647
           Y FAA  L       L+  ETKG +L+EI + +
Sbjct: 435 YIFAACNLCAACIIFLFAHETKGLTLEEINELY 467


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 745 YTFAAVTLYGVLYTALWVPETKGKSLQEIQKFW 647
           Y FAA  L       L+  ETKG +L+EI + +
Sbjct: 435 YIFAACNLCAACIIFLFAHETKGLTLEEINELY 467


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 93  GGRAHSPPGVKWLLEPIDIYN 155
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 336 ITRCYSFTVEVNRERLGFEYRCIAQHECTGRLIPYTTT 449
           + R Y F ++V+RER+GF  +  A       +I  TTT
Sbjct: 654 LNRLYRFYLKVDRERIGFSNKRAAILLRGANVIGMTTT 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,669
Number of Sequences: 5004
Number of extensions: 65895
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)