Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b06
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040646-6|AAK31540.1|  510|Caenorhabditis elegans Hypothetical ...    36   0.024
AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical ...    36   0.024
Z46381-4|CAA86519.2|  604|Caenorhabditis elegans Hypothetical pr...    35   0.073
AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical ...    32   0.39 
U42835-1|AAA83585.1|   87|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical ...    28   6.3  
AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxi...    28   6.3  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    28   8.3  

>AF040646-6|AAK31540.1|  510|Caenorhabditis elegans Hypothetical
           protein H17B01.1b protein.
          Length = 510

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -2

Query: 748 FYTFAAVTLYGVLYTALWVPETKGKSLQEIQKFWTK 641
           F+ F+    + + YT  +VPETKGKS+++IQ  + K
Sbjct: 473 FFIFSGFLAFFIFYTWKFVPETKGKSIEQIQAEFEK 508


>AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical
           protein H17B01.1a protein.
          Length = 492

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -2

Query: 748 FYTFAAVTLYGVLYTALWVPETKGKSLQEIQKFWTK 641
           F+ F+    + + YT  +VPETKGKS+++IQ  + K
Sbjct: 455 FFIFSGFLAFFIFYTWKFVPETKGKSIEQIQAEFEK 490


>Z46381-4|CAA86519.2|  604|Caenorhabditis elegans Hypothetical
           protein M01F1.5 protein.
          Length = 604

 Score = 34.7 bits (76), Expect = 0.073
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 757 HAVFYTFAAVTLYGVLYTALWVPETKGKSLQEIQK-FWTKSE 635
           +  F+ +   T+  +++   +VPETKG S+ E++  F TK E
Sbjct: 535 YGTFFIYCGCTMVALVFVFFFVPETKGYSIDEVEMLFMTKEE 576


>AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical
           protein Y51A2D.4 protein.
          Length = 606

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -2

Query: 757 HAVFYTFAAVTLYGVLYTALWVPETKGKSLQEIQ 656
           +  F+ +A +T+   ++    VPETKG S++E++
Sbjct: 531 YGAFWLYAGLTVIAFIFILFLVPETKGYSIEEVE 564


>U42835-1|AAA83585.1|   87|Caenorhabditis elegans Hypothetical
           protein C04F6.2 protein.
          Length = 87

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 727 TLY-GVLYTALWVPETKGKSLQEIQKFWTKSEP 632
           T+Y GV Y   W+PET GK+ QEI + ++   P
Sbjct: 3   TVYVGVTYK--WLPETAGKTPQEINRHFSPEFP 33


>AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical
           protein R09B5.11 protein.
          Length = 516

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 748 FYTFAAVTLYGVLYTALWVPETKGKSLQEIQK 653
           F  F   T    ++T  +VPETKGKS   I+K
Sbjct: 474 FLMFTFFTFTFAIFTWKFVPETKGKSPSAIRK 505


>AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform a protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 340 HDVIP-SPWKSIVNAWDSNTVASLNTNAPDVSSLIPRRHIG 459
           H  +P S W+ I   W S +    N++ P+ + L+ R   G
Sbjct: 313 HQRLPGSVWRGIAQRWSSTSSKKKNSDEPEQAELLQRNGAG 353


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 726 PCTEFCIRRCGCPRRKGKVYRRYRSS 649
           PCT   +R    PRRK  + RR RS+
Sbjct: 43  PCTSRVLRGSAIPRRKSSLKRRTRSN 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,883,733
Number of Sequences: 27780
Number of extensions: 377674
Number of successful extensions: 767
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)