Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b06
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.4  

>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/16 (50%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = -3

Query: 696 GCPRRKGK-VYRRYRS 652
           GCPRR+G+  Y R+++
Sbjct: 5   GCPRRRGRQTYTRFQT 20


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -3

Query: 486 KINALLKIHSYMSSWYKG*DVRCIRVERCNGIRIPGVHD 370
           ++NA L   S ++S   G  +  +  +   G+R+P +H+
Sbjct: 125 EVNARLSRSSALASKATGYPLAYVAAKLALGVRLPDIHN 163


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 657 CISCRLFPFVSGTHSAVYKTP 719
           CISCR       THSA    P
Sbjct: 626 CISCRQGTVPDETHSACRDIP 646


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,011
Number of Sequences: 438
Number of extensions: 5285
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)