Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b02
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0612 + 26117306-26118045,26118151-26118680,26119247-261192...    31   0.88 
07_01_0248 - 1821340-1821996,1823619-1823761,1824239-1824453,182...    30   2.0  
12_01_0228 - 1726856-1727049,1727280-1727355,1727454-1727585,172...    29   3.5  
08_02_1004 - 23461798-23462024,23462340-23462415,23463479-234636...    29   3.5  
10_06_0063 + 10255170-10255372,10255418-10255442,10255771-10255935     29   4.7  
06_01_1196 + 10289708-10289823,10290828-10291541,10291614-102920...    28   8.2  

>03_05_0612 +
           26117306-26118045,26118151-26118680,26119247-26119278,
           26119910-26121175
          Length = 855

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 720 TVYNWLYDLVKRTSKSTYTLRAVTF 646
           T+ +W++D +KR S  T TL AVTF
Sbjct: 618 TMRHWIFDFLKRGSSHTNTLLAVTF 642


>07_01_0248 -
           1821340-1821996,1823619-1823761,1824239-1824453,
           1825911-1826049,1826152-1826385,1826504-1826624
          Length = 502

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -3

Query: 460 RKRDPLRGSGEKLSGLSVWVNLLAEPYRLFLPRSYLELIEWNGQRIRHGLKTSVGVN-LI 284
           R  DP+ G      G +V  NL    YRL     Y+ L+   G  I + + T++ +  L+
Sbjct: 97  RSPDPVHGKRNYTYGQAVRANLGVAKYRLCSVAQYVNLV---GVTIGYTITTAISMGYLL 153

Query: 283 FYMKRYKMIFAHTL 242
             M  Y   F H +
Sbjct: 154 STMTNYSSKFGHAI 167


>12_01_0228 -
           1726856-1727049,1727280-1727355,1727454-1727585,
           1727665-1727775,1727892-1727942,1728114-1728275,
           1729558-1729584
          Length = 250

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 547 VGELTGLKLDDVANTNPSKSRA*QNLPRDRKRDPLRGSGEKLSGLS 410
           +G+L GLK DD   + P   +A  +   DR ++ + G GE L  LS
Sbjct: 129 MGDLHGLKFDDAVRSKPDAYKAFSS--EDRSQE-IPGGGESLDQLS 171


>08_02_1004 -
           23461798-23462024,23462340-23462415,23463479-23463610,
           23463927-23464004,23464919-23465320
          Length = 304

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 547 VGELTGLKLDDVANTNPSKSRA*QNLPRDRKRDPLRGSGEKLSGLS 410
           +G+L GLK +D     P   RA  +  R+R+   + G GE L  LS
Sbjct: 172 IGDLQGLKYEDAGKEKPEAYRAFLSHKRNRQ---IPGGGESLDQLS 214


>10_06_0063 + 10255170-10255372,10255418-10255442,10255771-10255935
          Length = 130

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -2

Query: 365 TKLSRADRMERSANTTWT*NICRSQSNFLYEKI*DDICAHIMYSFTLFHLS 213
           T++    R E S +TTW+  I ++ S+  Y+K+ D + ++   +  + H+S
Sbjct: 24  TRVCAPTRSEPSLSTTWSIEIIQASSSVAYQKMSDHMISNEYAARYIRHIS 74


>06_01_1196 +
           10289708-10289823,10290828-10291541,10291614-10292058,
           10292329-10293642
          Length = 862

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 383 LPPIFTTKLSRADRMERSANTTWT*NICRSQSN 285
           LP IFT  +S +DR E+ AN        RS+SN
Sbjct: 565 LPMIFTPSVSTSDRAEKIANLHLATKSFRSKSN 597


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,698,792
Number of Sequences: 37544
Number of extensions: 294288
Number of successful extensions: 424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)