Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16b01
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022978-9|AAG24185.1|  353|Caenorhabditis elegans Seven tm rece...    30   2.2  
AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine re...    29   2.9  
AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z81050-9|CAB02858.2|  400|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z69716-7|CAE17717.1|  153|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL009170-2|CAE17896.1|  153|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AF022978-9|AAG24185.1|  353|Caenorhabditis elegans Seven tm
           receptor protein 256 protein.
          Length = 353

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 341 VSFHFLYIFKQLLISLLLQCGIPIF 267
           VS+ F  I KQL I+LL Q  IP+F
Sbjct: 240 VSYKFKTIQKQLFIALLFQTAIPVF 264


>AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine
           receptor, class u protein27 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = -3

Query: 424 LIFFIFFQS*KTCGKTILHVLYCVSVVLYHFIFYIFLSNY*FHFSYNVEYPFSVLT-KYL 248
           ++FFIF         T +   +C SV   H++  +++S Y  +++ N+ +PF V T + +
Sbjct: 81  VLFFIFDFVYIRLMTTGMFTSWCASVSPNHYLMVLYISTYYVNYA-NMIFPFLVSTMRLV 139

Query: 247 LFSY 236
           L +Y
Sbjct: 140 LIAY 143


>AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.9 protein.
          Length = 1142

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 382 KTILHVLYCVSVVLYHFIFYIFLSNY 305
           +++ ++L CV+  LY+F  YIF++ Y
Sbjct: 328 RSVFYILNCVNPYLYYFKKYIFVNEY 353


>Z81050-9|CAB02858.2|  400|Caenorhabditis elegans Hypothetical
           protein C50B6.11 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 419 IFYIFSKLKNMR*NNLACIVLC*CS--FVSFHFLYIFKQLLISLL 291
           IF IFS   N   ++++C V+C  +    SF F +IF  LL+++L
Sbjct: 13  IFRIFSLQNNYFLSSISCFVVCGPAGRLSSFMFFHIFLGLLVAVL 57


>Z69716-7|CAE17717.1|  153|Caenorhabditis elegans Hypothetical
           protein H19J13.2 protein.
          Length = 153

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 361 TIHARLFYRMFFNFEKI*KILKTGAYFKYVKLYWLSRFSIHTLFLVLSILKL 516
           T+  RL  R++ N E      +TG+  K+ K YWL+  S   +FL +   ++
Sbjct: 18  TLENRLHLRIYEN-EHHANGTETGSRKKFRKCYWLTEISTKQMFLKIKYFQI 68


>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
           protein B0393.5 protein.
          Length = 1106

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 459 LALEIFDSYTFFSFIYFKVILTSNQVYRIST*KEPY 566
           LAL I DS TF  FIY K+   +N +   ST    Y
Sbjct: 109 LALIIGDSMTFAHFIYSKLNFNTNAIAGFSTRDSSY 144


>AL009170-2|CAE17896.1|  153|Caenorhabditis elegans Hypothetical
           protein H19J13.2 protein.
          Length = 153

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 361 TIHARLFYRMFFNFEKI*KILKTGAYFKYVKLYWLSRFSIHTLFLVLSILKL 516
           T+  RL  R++ N E      +TG+  K+ K YWL+  S   +FL +   ++
Sbjct: 18  TLENRLHLRIYEN-EHHANGTETGSRKKFRKCYWLTEISTKQMFLKIKYFQI 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,996,295
Number of Sequences: 27780
Number of extensions: 312622
Number of successful extensions: 644
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)