Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a23
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   5.2  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   6.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.1  

>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 465 YLFFCLHVELASIFVVILYRFFEIDLFA*LSVQLF*FTARVVLF 334
           Y FF  H E   + VVI+Y F  +  F+   +    +  R+VL+
Sbjct: 50  YQFFGGHYESFELLVVIVYYFSHVGSFSLAEIYRITWDKRIVLY 93


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 434 ANSTCKQKNKYKHCNSSLARNYNYFCIKKNSSLL 535
           AN T  Q+NK+      L+RN  +  I  N S L
Sbjct: 138 ANVTLSQENKWSFITGYLSRNDKFLKISSNDSEL 171


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 771 GSSFGGNFNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGV 649
           G+ FGGNFN +   +R    +P   +  P+P  +    + +
Sbjct: 447 GNDFGGNFNNMQ--SRSTTTSPTSAVASPAPTENEDSNAAI 485


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 720  PRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQ 604
            P + P P   PP PAG PS     +  +S      PG +
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,967
Number of Sequences: 5004
Number of extensions: 65772
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)