Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16a23
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 33 0.19
10_08_0477 - 18188280-18188490,18188572-18188748,18189141-181893... 30 1.8
09_06_0053 - 20537433-20537833,20537910-20538456 30 2.4
02_04_0091 + 19651828-19652086,19652199-19652269,19652404-196525... 29 3.1
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576... 29 4.1
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 29 4.1
09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148 29 4.1
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095 29 4.1
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 29 4.1
01_01_1183 - 9428931-9429319,9429438-9429723 29 4.1
03_02_0992 + 13049871-13050449 29 5.4
02_05_0814 - 31970558-31971126,31971242-31971413 29 5.4
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 29 5.4
11_06_0726 - 26707605-26708036 28 7.2
07_03_0623 - 20033815-20034009,20034308-20034415,20034416-200344... 28 7.2
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714... 28 7.2
02_03_0135 - 15602404-15602850,15603332-15603588,15605095-156052... 28 7.2
05_02_0040 + 5904169-5904304,5904382-5904938 28 9.5
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 24 10.0
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -2
Query: 768 SSFGGNFNYLSAAARDPRAN--PGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKA 595
SS+GGN Y S +A P ++ GP +PPS P G G +PP G
Sbjct: 323 SSYGGNNAYNSDSAVPPPSSYGGGPGSYPPSYGAPPPNPPYSGGAPGGQGSLPPSYDGGY 382
Query: 594 YGR*M 580
GR M
Sbjct: 383 GGRPM 387
>10_08_0477 -
18188280-18188490,18188572-18188748,18189141-18189304,
18189667-18189720,18190572-18191054
Length = 362
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 619 HEPISGSTDHHSACLRGVTGRRGGKQHRTRIRPRISGSGR 738
H P+S S+ HH QHR R R R+ G GR
Sbjct: 4 HLPVSPSSSHHLLDAAPTPASPAHAQHRRRRRRRMCGGGR 43
>09_06_0053 - 20537433-20537833,20537910-20538456
Length = 315
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 771 GSSFGGNFNYLSAAARDPRANPGPVLFPPSPAGDP 667
GS GGN SA DP PGP + PAG P
Sbjct: 275 GSGGGGNIIVSSAVVMDPYPTPGP--YGAFPAGTP 307
>02_04_0091 +
19651828-19652086,19652199-19652269,19652404-19652505,
19652626-19652730,19652865-19653000,19654178-19654287,
19654381-19654461
Length = 287
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3
Query: 642 RPPLRLSARGHRPARG 689
RPPL ARG RPARG
Sbjct: 10 RPPLAAGARGRRPARG 25
>11_06_0557 -
24955837-24956214,24957225-24957395,24957576-24957635,
24958419-24958623,24958710-24958953,24959103-24959394,
24959734-24960828,24960915-24961409,24961665-24961823,
24961893-24962387
Length = 1197
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 632 PEAPTTTPLVCEGSPAGEGGNSTGP 706
P AP T V +GSP G G + GP
Sbjct: 110 PRAPATAETVPQGSPRGPGVRTVGP 134
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 720 PRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKAYG 589
P N GP + P T+ GA GY PPG QG G
Sbjct: 275 PPPNAGPPNYQPHAPNPQGYTNYQQGGAPGYQGGPPGYQGSNQG 318
>09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148
Length = 416
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 620 TNPYPEAPTTTPLVCEGSPAGEGGNSTGPGFALG 721
T YPE P PLV +G G G+S G F++G
Sbjct: 259 TKLYPEEPRYLPLV-KGGGGGGDGDSDGGRFSIG 291
>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
Length = 597
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = -2
Query: 738 SAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYG---FVPPGSQGKAYGR 586
S A A P L PP PA P Q GV G +G G V P +G R
Sbjct: 92 SVCAEGEAAAQQPTLAPP-PAQQPQQNQGVGFGGTGAGAATTVSPAPRGTTMAR 144
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 720 PRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKAYGR*M 580
P A GP +FPP+ G P G S G++ P YG+ M
Sbjct: 552 PTAPLGPPMFPPAYGGQP-MVYNAQPGPSPQGYMHPAGPQLQYGQQM 597
>01_01_1183 - 9428931-9429319,9429438-9429723
Length = 224
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 623 NPYPEAPTTTPLVCEGSPAGEGGNSTGPGFALGSLAAA 736
+P P AP P + + G +++GPG + G+ A A
Sbjct: 163 HPAPGAPAPAPSAAAAATSHPGASASGPGASSGAAAVA 200
>03_02_0992 + 13049871-13050449
Length = 192
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 620 TNPYPEAPTTTPLVCEGSPAGEGGNS 697
T+P A T TPL GS +GEGG+S
Sbjct: 99 TSPPLHAATVTPLRPAGSRSGEGGSS 124
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Frame = +2
Query: 602 PWEPGGTNPYPEAP---TTTPLVCEGSPAGEGGNSTGP 706
P P T PYP P TTP SPA GG P
Sbjct: 167 PSTPMPTTPYPSTPMTTPTTPYTTPTSPACSGGAGATP 204
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 83 YINLYIFFSYTYTEFGRLDSIERSLSREQFVKKPYPWN 196
Y +L + + ++ F +LDS E S +F+K+ Y W+
Sbjct: 1874 YRHLDLLYYFSTQIFWKLDSTETSSRMRRFMKRNYKWS 1911
>11_06_0726 - 26707605-26708036
Length = 143
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 614 PAPKVKPTDDEWPSQIVVRTNLSTRAVTV 528
P P ++P D +WP+Q V R + R V +
Sbjct: 93 PLPSLQPHDFQWPAQAVEREEEARRRVVL 121
>07_03_0623 -
20033815-20034009,20034308-20034415,20034416-20034478,
20035361-20036221,20036881-20037461,20037551-20037623,
20037756-20037947,20038728-20039513
Length = 952
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 626 PYPEAPTTTPLVCEGSPAGEGGNSTGPGFALGSLAA 733
P+P +PTT GS AG G G +G A
Sbjct: 12 PHPRSPTTAQPPNNGSAAGAAAGGGGGGVGMGPAGA 47
>03_02_0786 -
11169820-11170158,11170245-11170433,11171173-11171469,
11171568-11171630,11171884-11171997,11173011-11173091,
11173176-11173307,11174265-11174363,11174453-11174530,
11174641-11174901
Length = 550
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 768 SSFGGNFNYLSAAARDPRANPGPVLFPPSPAGDP 667
SS GG + SA RA PG + PP P G P
Sbjct: 4 SSRGGRQSASSATRMASRARPGFPVAPPPPMGPP 37
>02_03_0135 -
15602404-15602850,15603332-15603588,15605095-15605200,
15605500-15605630,15606159-15606223,15606345-15606409,
15606560-15606955
Length = 488
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 660 SARGHRPARGETAPDQDSPSDLWQRP 737
S R RPA E APD ++ S+ W P
Sbjct: 192 SVRCMRPANHEAAPDTETDSERWAPP 217
>05_02_0040 + 5904169-5904304,5904382-5904938
Length = 230
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 747 NYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFV 619
N L A+A PG V FPP S+T+ V+ GA +GFV
Sbjct: 99 NTLGASAARVDVAPGGV-FPPHYHPRASETAVVLAGAVYFGFV 140
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 23.8 bits (49), Expect(2) = 10.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 666 SQTSGVVVGASGYGFVPPGS 607
S T+G G GFVPPGS
Sbjct: 114 SLTNGAGSGRGMRGFVPPGS 133
Score = 22.2 bits (45), Expect(2) = 10.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 771 GSSFGGNFNYLSAAARDPRANPGPVLFPPSPAGDPS 664
G S G + N + A+ PG ++ PP AG S
Sbjct: 48 GGSGGLDLNSQADASYQQILEPGSLVLPPIRAGSRS 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,354,474
Number of Sequences: 37544
Number of extensions: 472012
Number of successful extensions: 2057
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2052
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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