Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16a23
(772 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S72869-1|AAC60637.1| 585|Homo sapiens H4(D10S170) protein. 35 0.37
BC064391-1|AAH64391.1| 474|Homo sapiens coiled-coil domain cont... 35 0.37
BC036757-1|AAH36757.2| 474|Homo sapiens coiled-coil domain cont... 35 0.37
AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha ... 31 3.5
AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin receptor-i... 31 3.5
AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor i... 31 3.5
AL158013-1|CAH71494.1| 354|Homo sapiens NK2 transcription facto... 31 6.0
BC098440-1|AAH98440.1| 542|Homo sapiens OTUD5 protein protein. 30 8.0
BC028225-1|AAH28225.1| 561|Homo sapiens OTUD5 protein protein. 30 8.0
BC009917-1|AAH09917.1| 571|Homo sapiens OTU domain containing 5... 30 8.0
>S72869-1|AAC60637.1| 585|Homo sapiens H4(D10S170) protein.
Length = 585
Score = 34.7 bits (76), Expect = 0.37
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 750 FNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKA 595
FN +SA PR P+ + PSP+ + G+ + GF PP S +A
Sbjct: 337 FNEMSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRA 388
>BC064391-1|AAH64391.1| 474|Homo sapiens coiled-coil domain
containing 6 protein.
Length = 474
Score = 34.7 bits (76), Expect = 0.37
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 750 FNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKA 595
FN +SA PR P+ + PSP+ + G+ + GF PP S +A
Sbjct: 337 FNEMSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRA 388
>BC036757-1|AAH36757.2| 474|Homo sapiens coiled-coil domain
containing 6 protein.
Length = 474
Score = 34.7 bits (76), Expect = 0.37
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 750 FNYLSAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKA 595
FN +SA PR P+ + PSP+ + G+ + GF PP S +A
Sbjct: 337 FNEMSAQGLRPRTVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTRA 388
>AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha 1
protein.
Length = 1806
Score = 31.5 bits (68), Expect = 3.5
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -2
Query: 720 PRANPGPVLFP--PSPAGDPSQTSGVVVGASGYGFVPPGSQG 601
P+ NPGPV FP P P G+P VG PG G
Sbjct: 1304 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPG 1345
>AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin
receptor-interacting protein splice variant b protein.
Length = 1548
Score = 31.5 bits (68), Expect = 3.5
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 605 WEPGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 706
W GG +P P AP+ + GS G GG+S GP
Sbjct: 437 WRGGGPSPTPGAPSPSH---HGSAGGGGGSSQGP 467
>AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor
interacting protein splice variant a protein.
Length = 2161
Score = 31.5 bits (68), Expect = 3.5
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 605 WEPGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGP 706
W GG +P P AP+ + GS G GG+S GP
Sbjct: 1050 WRGGGPSPTPGAPSPSH---HGSAGGGGGSSQGP 1080
>AL158013-1|CAH71494.1| 354|Homo sapiens NK2 transcription factor
related, locus 4 (Drosophila) protein.
Length = 354
Score = 30.7 bits (66), Expect = 6.0
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 611 PGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGPGFALGSLAAAE 739
PG P P APT P + E SP+ + G G A AA E
Sbjct: 296 PGQAGPQPPAPTPAPELEELSPSPPALHGPGGGLAALDAAAGE 338
>BC098440-1|AAH98440.1| 542|Homo sapiens OTUD5 protein protein.
Length = 542
Score = 30.3 bits (65), Expect = 8.0
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 578 AIHRP*ALPWEPGGT-NPYPEAPTTTPLVCEGSPAGEGGNSTGPGFALGSLAA 733
A+HR AL PG P P+ + P C G P G GG GPG ALG+ AA
Sbjct: 53 ALHRW-ALAVPPGAVAGPRPQQASPPP--C-GGPGGPGG---GPGDALGAAAA 98
>BC028225-1|AAH28225.1| 561|Homo sapiens OTUD5 protein protein.
Length = 561
Score = 30.3 bits (65), Expect = 8.0
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 578 AIHRP*ALPWEPGGT-NPYPEAPTTTPLVCEGSPAGEGGNSTGPGFALGSLAA 733
A+HR AL PG P P+ + P C G P G GG GPG ALG+ AA
Sbjct: 77 ALHRW-ALAVPPGAVAGPRPQQASPPP--C-GGPGGPGG---GPGDALGAAAA 122
>BC009917-1|AAH09917.1| 571|Homo sapiens OTU domain containing 5
protein.
Length = 571
Score = 30.3 bits (65), Expect = 8.0
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 578 AIHRP*ALPWEPGGT-NPYPEAPTTTPLVCEGSPAGEGGNSTGPGFALGSLAA 733
A+HR AL PG P P+ + P C G P G GG GPG ALG+ AA
Sbjct: 77 ALHRW-ALAVPPGAVAGPRPQQASPPP--C-GGPGGPGG---GPGDALGAAAA 122
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,251,985
Number of Sequences: 237096
Number of extensions: 2483929
Number of successful extensions: 10312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10269
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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