Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a23
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical ...    32   0.39 
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    31   1.2  
Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical
           protein C16A11.3 protein.
          Length = 726

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = +3

Query: 414 ELQQKY*LIQRANKKINTNIAILV*QEIITIFVLRRTVHCYSTCREISSNYNL 572
           +LQQK   ++  +KKI  N+   V Q  I+   LR+TV   + C E+S N NL
Sbjct: 266 DLQQKIQGLEAMDKKIQYNVLSRVFQATIS---LRKTVQKLTKCGEMSKNGNL 315


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 690 PPSPAGDPSQTSGVVVGASGYGFVPPGSQG 601
           PP PAG P           GYG  PPG  G
Sbjct: 257 PPGPAGPPGPPGNNGAPGGGYGVGPPGPPG 286


>Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical
           protein M01G12.6 protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 460 IFLFAR*IS*YFCCNSV*IFRNRFVCLIISSTLLVYST 347
           IFL A   S YFCC  V + R +   L I   L++ ST
Sbjct: 113 IFLIANLPSLYFCCMDVFLCRKKSTWLFIGILLILRST 150


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 768 SSFGGNFN-YLSAAARDPRANPGPVLFPPSPAGDPSQTS-GVVVGAS 634
           S  GGN N Y S  A + R  P PV  P    G+P +T  GV V  +
Sbjct: 454 SGCGGNGNNYESREACEDRCAPPPVGLPKCEIGEPLKTKIGVPVNCA 500


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 720  PRANPGPVLFPPSPAG--DPSQTS 655
            P+ NPGP   PPSP G  DP++ S
Sbjct: 936  PKPNPGPGPGPPSPNGPSDPNKPS 959


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,590,986
Number of Sequences: 27780
Number of extensions: 401339
Number of successful extensions: 1460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)