Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16a21
(861 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 242 5e-65
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 33 0.052
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 29 0.85
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 27 4.5
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 27 4.5
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 6.0
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 26 7.9
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 7.9
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 242 bits (592), Expect = 5e-65
Identities = 119/240 (49%), Positives = 154/240 (64%), Gaps = 1/240 (0%)
Frame = -3
Query: 859 GNWKMNGDKNQINEIVNNLKKGPLDP-NVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWK 683
GN+KMNG + I+ L L+ +VE ++ +YL + + ++ V AQN +
Sbjct: 9 GNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQVKKDIGVGAQNVFD 68
Query: 682 SPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIG 503
GA+TGE S + D G+ + + GHSERRTIF E DE VA+K ALE GL V+ACIG
Sbjct: 69 KKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIG 128
Query: 502 ETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHA 323
ETL ERE+ +T VV RQL A+ + W IV+AYEPVWAIGTGKTATP+QAQ+VH
Sbjct: 129 ETLAEREANETINVVVRQLNAIADKV-QNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAE 187
Query: 322 LRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPEFVEIVNAN 143
+R W + + SV++ +R+ YGGSV N KE DIDGFLVGGASLKPEF IVN +
Sbjct: 188 IRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKPEFHNIVNVH 247
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 33.1 bits (72), Expect = 0.052
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +2
Query: 575 FTKNCSSFRMTKYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLH 736
F + ++ TK N + SN+F+H+ + T +SS T L IIRNDS H
Sbjct: 26 FHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACNTCL----KIIRNDSFH 75
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 29.1 bits (62), Expect = 0.85
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 394 YEPVWAIGTGKT--ATPQQAQDVHHALRNWLSANVSGSVSDAVRI 266
Y +W++G TP+ + VH LR WL V G DA+ +
Sbjct: 172 YLHLWSVGQPDLNWETPKVREAVHDILRFWLDRGVDGFRLDAINM 216
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 251 RATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLGSSSLACTNS 379
+AT + + Y P +G K + LSL + ++ C NS
Sbjct: 165 KATKFPHFGILYHPESVGSSKSLKIFKNFLSLADTPNIQCVNS 207
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 283 SDAVRIQYGGSVTAANAKELASCKDIDGFLVG 188
SD R Q+G S+ +NAKEL I G+ G
Sbjct: 259 SDLSRGQHGKSIILSNAKELYKSVGIRGYYRG 290
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 319 EEHGGHLEPVGE*QSCLYQ*PIQVHRQAQYFP 414
+ +GG+L P E S ++ PI++ R A Y+P
Sbjct: 69 KSYGGNLAPFDEEFSFHFRGPIELKRFAVYYP 100
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 348 WGVAVLPVPIAHTGS*ASTIFSHLSPMADTKAFNCLKTTSSVLPDSLSSRVSPIQAMTF 524
+ + +LP I S A +F +P ++ F CL + +L L+S V +Q ++
Sbjct: 226 YSLFLLPRLIRKQLSDAPIVFFLHAPFCTSEVFRCLSKRAEILKGVLASNVIAMQTDSY 284
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 420 SPMADTKAFN-CLKTTSSVLPDSLSSRVSP 506
SP+ TK+FN L ++SS+L + S SP
Sbjct: 220 SPLTKTKSFNDALTSSSSILKPCMPSIASP 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,488,197
Number of Sequences: 5004
Number of extensions: 74998
Number of successful extensions: 237
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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