Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16a21
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 291 5e-79
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 289 1e-78
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 284 5e-77
03_05_1169 + 30892888-30892916,30894786-30894822,30895091-308951... 44 2e-04
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321... 31 1.2
01_06_0627 - 30705604-30706977 29 3.6
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 29 6.3
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413... 28 8.3
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 8.3
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 291 bits (714), Expect = 5e-79
Identities = 134/239 (56%), Positives = 174/239 (72%), Gaps = 1/239 (0%)
Frame = -3
Query: 859 GNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKS 680
GNWK NG K+ ++++V L L+P+V+V+V P IY+ VK + D +EV+AQN W
Sbjct: 59 GNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQNVWIG 118
Query: 679 PKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGE 500
GA+TGEIS + D+G WVILGHSERR + GE D+ + +K A+AL +KVIACIGE
Sbjct: 119 KGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVKVIACIGE 178
Query: 499 TLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHAL 320
LEERE+GKT +V F+Q+KA +I W ++V+AYEPVWAIGTGK ATP+QAQ+VH A+
Sbjct: 179 LLEEREAGKTFDVCFKQMKAFADSI-TNWADVVIAYEPVWAIGTGKVATPEQAQEVHAAV 237
Query: 319 RNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLK-PEFVEIVNA 146
R+WL NVS V+ +RI YGGSV AAN ELA +DIDGFLVGGASLK P+F I+N+
Sbjct: 238 RDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATIINS 296
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 289 bits (710), Expect = 1e-78
Identities = 136/237 (57%), Positives = 178/237 (75%), Gaps = 2/237 (0%)
Frame = -3
Query: 850 KMNGDKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSP 677
++NG +Q+++IV L +G + VEV+V P ++L VK+ + ++VAAQNCW
Sbjct: 4 ELNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKK 63
Query: 676 KGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGET 497
GAFTGE+S M+ ++ + WVILGHSERR++ GE +E V +KVA+AL GLKVIAC+GET
Sbjct: 64 GGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGET 123
Query: 496 LEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALR 317
LE+RESG T +VV Q KA+ I D W N+V+AYEPVWAIGTGK ATP QAQ+VH LR
Sbjct: 124 LEQRESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLR 182
Query: 316 NWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPEFVEIVNA 146
WL+ANVS V+++ RI YGGSVT AN KELA+ D+DGFLVGGASLKPEF++I+N+
Sbjct: 183 KWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINS 239
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 284 bits (697), Expect = 5e-77
Identities = 138/240 (57%), Positives = 171/240 (71%), Gaps = 2/240 (0%)
Frame = -3
Query: 859 GNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCW 686
GNWK NG + +IV L + P + VEV+V P ++L VK ++ + VAAQNCW
Sbjct: 10 GNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSVAAQNCW 69
Query: 685 KSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACI 506
GAFTGEIS M+ ++ V WVILGHSERR + GE + VA+K+A+AL G+KVIACI
Sbjct: 70 VRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGIKVIACI 129
Query: 505 GETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHH 326
GETLE+RE+G T EVV Q KA+ I D W N+VLAYEPVWAIGTGK ATP QAQ+VH
Sbjct: 130 GETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWAIGTGKVATPAQAQEVHD 188
Query: 325 ALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPEFVEIVNA 146
LR WL NVS +V+++ RI Y GSV AN KELA+ D+DGFLVGGASLKPEFV+I+ +
Sbjct: 189 GLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLKPEFVDIIKS 248
>03_05_1169 +
30892888-30892916,30894786-30894822,30895091-30895146,
30895192-30895306,30896063-30896127,30896218-30896299,
30896420-30896479
Length = 147
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/56 (48%), Positives = 33/56 (58%)
Frame = -3
Query: 340 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLK 173
Q VH LR L+ NV ++ R S TA+N KELA D++GFLV GASLK
Sbjct: 78 QTVHGGLRKLLTTNVRIHMNHLCR-----SCTASNCKELAVQPDLNGFLVSGASLK 128
>02_03_0230 +
16620856-16620991,16622157-16622239,16632090-16632149,
16632795-16632903,16633285-16633337,16633503-16633559,
16633730-16633846
Length = 204
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = -3
Query: 583 FGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENI 404
F E+ EL VA ES L + +T EE ++ K ++ F + +ALV+A +N+
Sbjct: 142 FIERAELKQMMVATLAESDLNLT---DQTFEEADTNKDGKIDFEEWQALVNAHPCLLKNM 198
Query: 403 VLAY 392
LAY
Sbjct: 199 TLAY 202
>01_06_0627 - 30705604-30706977
Length = 457
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -3
Query: 388 PVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYG--GSVTAANAKELA 221
PV+ +G + ++ V HA WL A + SV V + +G GS +AA KE+A
Sbjct: 223 PVYCVGPLVASGEEEGGGVRHACLAWLDAQPARSV---VFLCFGSMGSFSAAQLKEIA 277
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 695 LGCNFDIIRNDSLHIRQVNSRNTNNYL 775
LG NF++ RND L I V +N L
Sbjct: 104 LGLNFEVYRNDELTIEDVKRKNPRGIL 130
>09_02_0088 +
4136698-4136857,4137530-4137558,4137992-4138954,
4138973-4139301,4139398-4139485,4139766-4139864,
4139935-4140245,4140532-4140685
Length = 710
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = -3
Query: 319 RNWLSANV----SGSVSDAVRIQYGGSVT-AANAKELASCKDIDGFLVGGASLKPEFVEI 155
+NW + + SG + VR+ YGGSV +N+ + + GG KP F E+
Sbjct: 49 KNWQNGEIVGGHSGKMDRLVRLHYGGSVVEQSNSGSNFEGMSVKQLIFGG---KPSFEEL 105
Query: 154 V 152
V
Sbjct: 106 V 106
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 203 INVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLG 352
+ FA K + SS ++ V +T+ Y P+ I ++ + K + ILS G
Sbjct: 963 LKAFASIKQVIFSSMEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYG 1012
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,643,371
Number of Sequences: 37544
Number of extensions: 463507
Number of successful extensions: 1082
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -