Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a21
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...   380   e-108
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.1  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   3.6  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   3.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.4  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score =  380 bits (935), Expect = e-108
 Identities = 177/240 (73%), Positives = 207/240 (86%)
 Frame = -3

Query: 859 GNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKS 680
           GNWKMNG K++IN+IV  LKKGPLD NVEV+VGVP+IYL+Y K I+P+N+ +A QN +K 
Sbjct: 9   GNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTYAKNILPNNISIAGQNTYKV 68

Query: 679 PKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGE 500
            KGAFTGEISPAM+ D G+ WVILGHSERR IFGE DEL+AEKVAHALESGLKVIACIGE
Sbjct: 69  AKGAFTGEISPAMLLDNGIPWVILGHSERRNIFGENDELIAEKVAHALESGLKVIACIGE 128

Query: 499 TLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHAL 320
            LEERE+GKT+EVVFRQ KA+ + I + W+N+V+AYEPVWAIGTGKTATPQQAQ+VH  L
Sbjct: 129 KLEEREAGKTDEVVFRQTKAIANKI-NSWDNVVVAYEPVWAIGTGKTATPQQAQEVHEKL 187

Query: 319 RNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPEFVEIVNANQ 140
           RNW S NV+ +V++ VRI YGGSVTA NAK+LA  KDIDGFLVGGASLKP+FV+IVNA Q
Sbjct: 188 RNWFSKNVNQTVAETVRIIYGGSVTAGNAKDLAKEKDIDGFLVGGASLKPDFVQIVNAKQ 247


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 490 LRESHQYRQ*LSSQIQGHEQPFQQQ 564
           L+  H + Q  S+ +Q H +P+QQQ
Sbjct: 144 LQNHHHHLQ--STAVQDHHRPYQQQ 166


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 475 KTEEVVFRQLKALVSAIGDKWENIVLAYEP 386
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 475 KTEEVVFRQLKALVSAIGDKWENIVLAYEP 386
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 475 KTEEVVFRQLKALVSAIGDKWENIVLAYEP 386
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = -3

Query: 769 IVGVPAIYLSYVKTIIPDNVEVAAQN 692
           ++G P+  + Y   +IP+   ++ +N
Sbjct: 848 VIGTPSTGMMYKPFLIPEQTSISHEN 873


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 460 QLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQ 564
           ++ +  Q +  ++ HQ +Q  +  +   +QP QQQ
Sbjct: 410 KMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQ 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,916
Number of Sequences: 438
Number of extensions: 4952
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)