Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a20
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    62   7e-11
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    61   2e-10
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     30   0.44 
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    29   0.58 
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.1  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.5  

>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 9/171 (5%)
 Frame = -2

Query: 799 YVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPD-LKA 623
           + +QF+N AN  SHY+TTGPEIW QT   VD               T+YLKEK+   + +
Sbjct: 153 WTDQFDNVANLLSHYETTGPEIWDQTKGTVDGFTCSTGTGGTFAGVTKYLKEKSDGRVAS 212

Query: 622 YVVEPEGAQPIRGL------PVIKPLHLLQGSGYGCVPNLFKREY--MDGTLSVSDEEAM 467
           +V +P G+     +      P  K     +G G G +    +  Y  +D  + + DE+++
Sbjct: 213 FVADPPGSVLYSHIKTKGKHPDNKGSSFTEGIGQGRITGNVQPVYDLIDDAMKIPDEKSI 272

Query: 466 EYKKLIGEKEGLYVGYTXXXXXXXXXXXXXSGQLPEDSWVVTMLNDTGLKY 314
                + ++EGL++G +                L     VVT+L D+G KY
Sbjct: 273 NMFFRLLDQEGLFLGGSSCLNVVAAVEMAKI--LGPGKTVVTILCDSGHKY 321


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 25/68 (36%), Positives = 38/68 (55%)
 Frame = -2

Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
           Y+ NQF N AN ++H+ +TGPEIWRQ   ++D               +RYLK K+P +  
Sbjct: 190 YFANQFENPANWQAHFNSTGPEIWRQCAGKLDAFIAGSGTGGTIAGISRYLKSKDPSITV 249

Query: 622 YVVEPEGA 599
            + +P G+
Sbjct: 250 CLADPPGS 257


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 108  VVSDSDSLEHFHTNYISDMNALFY 179
            VV D D  EHF  NY+ D + LF+
Sbjct: 946  VVDDFDEFEHFQGNYLLDEDPLFH 969


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 104 LGCFGQRFFGTFSYKLYIRYECI-ILLVYKITRSLLV*N*LKMYKLINTEHICRSISILI 280
           + C   + FGT S  L+I + C    LVY ++R L       ++ LI T H   S+S+L+
Sbjct: 105 VSCSISKRFGTLSGALFILFSCAQFHLVYYMSRPL-----SNIFGLIATNH---SLSLLL 156

Query: 281 KN 286
           KN
Sbjct: 157 KN 158


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 429 YKPSFSPISFLYSIASS-SDTLRVPSMYSRLNKFGTQP 539
           +KPS S  + L+SIAS   D   + + +  ++K+G +P
Sbjct: 362 FKPSISTANTLFSIASRLKDVKWLSAGFDMIDKYGLKP 399


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +2

Query: 122 RFFGTFSYKLYIRYECIILLVYKITRSLLV*N*LKMYKLINTEHICRSISILI 280
           +F+  F+Y L ++   I  ++YK++ ++   + LK  K+I   +IC S  I I
Sbjct: 106 KFWRYFAYLLSLQI-VIDFVLYKLSSAMASLHYLKFVKIIALSYICFSSLIRI 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,224
Number of Sequences: 5004
Number of extensions: 59705
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)