Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16a20
(803 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X88562-1|CAA61252.1| 551|Homo sapiens cystathionine beta-syntha... 63 1e-09
X82166-1|CAA57656.1| 551|Homo sapiens cystathionine beta-syntha... 63 1e-09
L19501-1|AAA19874.1| 551|Homo sapiens cystathionine beta-syntha... 63 1e-09
L14577-1|AAA98524.1| 551|Homo sapiens cystathionine beta-syntha... 63 1e-09
BT007154-1|AAP35818.1| 551|Homo sapiens cystathionine-beta-synt... 63 1e-09
BC011381-1|AAH11381.1| 551|Homo sapiens CBS protein protein. 63 1e-09
BC010242-1|AAH10242.1| 551|Homo sapiens CBS protein protein. 63 1e-09
BC007257-1|AAH07257.1| 551|Homo sapiens CBS protein protein. 63 1e-09
BC000440-1|AAH00440.1| 551|Homo sapiens CBS protein protein. 63 1e-09
AF042836-2|AAC64683.1| 551|Homo sapiens cystathionine beta-synt... 63 1e-09
AF042836-1|AAC64684.1| 565|Homo sapiens cystathionine beta-synt... 63 1e-09
AL137314-1|CAB70691.1| 475|Homo sapiens hypothetical protein pr... 60 7e-09
>X88562-1|CAA61252.1| 551|Homo sapiens cystathionine beta-synthase
protein.
Length = 551
Score = 62.9 bits (146), Expect = 1e-09
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Frame = -2
Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
+ ++Q+ N +N +HY TT EI +Q ++D R LKEK P +
Sbjct: 218 HILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 277
Query: 622 YVVEPEG---AQPIRGLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKL 452
V+PEG A+P + + ++G GY +P + R +D +DEEA + ++
Sbjct: 278 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARM 337
Query: 451 IGEKEGLYVG 422
+ +EGL G
Sbjct: 338 LIAQEGLLCG 347
>X82166-1|CAA57656.1| 551|Homo sapiens cystathionine beta-synthase
protein.
Length = 551
Score = 62.9 bits (146), Expect = 1e-09
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Frame = -2
Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
+ ++Q+ N +N +HY TT EI +Q ++D R LKEK P +
Sbjct: 218 HILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 277
Query: 622 YVVEPEG---AQPIRGLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKL 452
V+PEG A+P + + ++G GY +P + R +D +DEEA + ++
Sbjct: 278 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARM 337
Query: 451 IGEKEGLYVG 422
+ +EGL G
Sbjct: 338 LIAQEGLLCG 347
>L19501-1|AAA19874.1| 551|Homo sapiens cystathionine beta-synthase
protein.
Length = 551
Score = 62.9 bits (146), Expect = 1e-09
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Frame = -2
Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
+ ++Q+ N +N +HY TT EI +Q ++D R LKEK P +
Sbjct: 218 HILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 277
Query: 622 YVVEPEG---AQPIRGLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKL 452
V+PEG A+P + + ++G GY +P + R +D +DEEA + ++
Sbjct: 278 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARM 337
Query: 451 IGEKEGLYVG 422
+ +EGL G
Sbjct: 338 LIAQEGLLCG 347
>L14577-1|AAA98524.1| 551|Homo sapiens cystathionine beta-synthase
protein.
Length = 551
Score = 62.9 bits (146), Expect = 1e-09
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Frame = -2
Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
+ ++Q+ N +N +HY TT EI +Q ++D R LKEK P +
Sbjct: 218 HILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 277
Query: 622 YVVEPEG---AQPIRGLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKL 452
V+PEG A+P + + ++G GY +P + R +D +DEEA + ++
Sbjct: 278 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARM 337
Query: 451 IGEKEGLYVG 422
+ +EGL G
Sbjct: 338 LIAQEGLLCG 347
>BT007154-1|AAP35818.1| 551|Homo sapiens
cystathionine-beta-synthase protein.
Length = 551
Score = 62.9 bits (146), Expect = 1e-09
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Frame = -2
Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
+ ++Q+ N +N +HY TT EI +Q ++D R LKEK P +
Sbjct: 218 HILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 277
Query: 622 YVVEPEG---AQPIRGLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKL 452
V+PEG A+P + + ++G GY +P + R +D +DEEA + ++
Sbjct: 278 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARM 337
Query: 451 IGEKEGLYVG 422
+ +EGL G
Sbjct: 338 LIAQEGLLCG 347
>BC011381-1|AAH11381.1| 551|Homo sapiens CBS protein protein.
Length = 551
Score = 62.9 bits (146), Expect = 1e-09
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Frame = -2
Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
+ ++Q+ N +N +HY TT EI +Q ++D R LKEK P +
Sbjct: 218 HILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 277
Query: 622 YVVEPEG---AQPIRGLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKL 452
V+PEG A+P + + ++G GY +P + R +D +DEEA + ++
Sbjct: 278 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARM 337
Query: 451 IGEKEGLYVG 422
+ +EGL G
Sbjct: 338 LIAQEGLLCG 347
>BC010242-1|AAH10242.1| 551|Homo sapiens CBS protein protein.
Length = 551
Score = 62.9 bits (146), Expect = 1e-09
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Frame = -2
Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
+ ++Q+ N +N +HY TT EI +Q ++D R LKEK P +
Sbjct: 218 HILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 277
Query: 622 YVVEPEG---AQPIRGLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKL 452
V+PEG A+P + + ++G GY +P + R +D +DEEA + ++
Sbjct: 278 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARM 337
Query: 451 IGEKEGLYVG 422
+ +EGL G
Sbjct: 338 LIAQEGLLCG 347
>BC007257-1|AAH07257.1| 551|Homo sapiens CBS protein protein.
Length = 551
Score = 62.9 bits (146), Expect = 1e-09
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Frame = -2
Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
+ ++Q+ N +N +HY TT EI +Q ++D R LKEK P +
Sbjct: 218 HILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 277
Query: 622 YVVEPEG---AQPIRGLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKL 452
V+PEG A+P + + ++G GY +P + R +D +DEEA + ++
Sbjct: 278 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARM 337
Query: 451 IGEKEGLYVG 422
+ +EGL G
Sbjct: 338 LIAQEGLLCG 347
>BC000440-1|AAH00440.1| 551|Homo sapiens CBS protein protein.
Length = 551
Score = 62.9 bits (146), Expect = 1e-09
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Frame = -2
Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
+ ++Q+ N +N +HY TT EI +Q ++D R LKEK P +
Sbjct: 218 HILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 277
Query: 622 YVVEPEG---AQPIRGLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKL 452
V+PEG A+P + + ++G GY +P + R +D +DEEA + ++
Sbjct: 278 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARM 337
Query: 451 IGEKEGLYVG 422
+ +EGL G
Sbjct: 338 LIAQEGLLCG 347
>AF042836-2|AAC64683.1| 551|Homo sapiens cystathionine
beta-synthase major isoform protein.
Length = 551
Score = 62.9 bits (146), Expect = 1e-09
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Frame = -2
Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
+ ++Q+ N +N +HY TT EI +Q ++D R LKEK P +
Sbjct: 218 HILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 277
Query: 622 YVVEPEG---AQPIRGLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKL 452
V+PEG A+P + + ++G GY +P + R +D +DEEA + ++
Sbjct: 278 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARM 337
Query: 451 IGEKEGLYVG 422
+ +EGL G
Sbjct: 338 LIAQEGLLCG 347
>AF042836-1|AAC64684.1| 565|Homo sapiens cystathionine
beta-synthase minor isoform protein.
Length = 565
Score = 62.9 bits (146), Expect = 1e-09
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Frame = -2
Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
+ ++Q+ N +N +HY TT EI +Q ++D R LKEK P +
Sbjct: 218 HILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 277
Query: 622 YVVEPEG---AQPIRGLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKL 452
V+PEG A+P + + ++G GY +P + R +D +DEEA + ++
Sbjct: 278 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARM 337
Query: 451 IGEKEGLYVG 422
+ +EGL G
Sbjct: 338 LIAQEGLLCG 347
>AL137314-1|CAB70691.1| 475|Homo sapiens hypothetical protein
protein.
Length = 475
Score = 60.5 bits (140), Expect = 7e-09
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Frame = -2
Query: 802 YYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKA 623
+ ++Q+ N +N HY TT EI +Q ++D R LKEK P +
Sbjct: 142 HILDQYRNASNPLPHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 201
Query: 622 YVVEPEG---AQPIRGLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKL 452
V+PEG A+P + + ++G GY +P + R +D +DEEA ++
Sbjct: 202 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTLARM 261
Query: 451 IGEKEGLYVG 422
+ +EGL G
Sbjct: 262 LIAQEGLLCG 271
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,803,089
Number of Sequences: 237096
Number of extensions: 1917352
Number of successful extensions: 7221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7209
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -