Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a19
         (910 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68749-5|CAC35817.1|  712|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z68219-6|CAC35826.1|  712|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm...    29   4.6  
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm...    29   4.6  
AF051403-2|AAC28323.1|  712|Caenorhabditis elegans fibulin-1 iso...    29   4.6  
AF051402-1|AAC28322.1|  712|Caenorhabditis elegans fibulin-1 iso...    29   4.6  
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ...    29   4.6  
AB212860-1|BAD98165.1|  712|Caenorhabditis elegans fibulin-1C pr...    29   4.6  
Z68749-7|CAA92962.2|  728|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z68749-6|CAC35818.1|  689|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z68219-9|CAA92483.2|  728|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z68219-7|CAC35827.1|  689|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AY851363-1|AAW34127.1|  728|Caenorhabditis elegans fibulin-1D sp...    28   8.0  
AF070477-1|AAC24035.1|  589|Caenorhabditis elegans fibulin-1D pr...    28   8.0  
AF051403-1|AAC28324.1|  689|Caenorhabditis elegans fibulin-1 iso...    28   8.0  
AF051401-1|AAC28321.1|  689|Caenorhabditis elegans fibulin-1 iso...    28   8.0  

>Z68749-5|CAC35817.1|  712|Caenorhabditis elegans Hypothetical
           protein F56H11.1a protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQLQS--CNGHP 314
           +C   + VC   + + K HS +  TN+IH  L    CN  P
Sbjct: 529 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNRCNRQP 569


>Z68219-6|CAC35826.1|  712|Caenorhabditis elegans Hypothetical
           protein F56H11.1a protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQLQS--CNGHP 314
           +C   + VC   + + K HS +  TN+IH  L    CN  P
Sbjct: 529 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNRCNRQP 569


>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
           morphology protein1, isoform a protein.
          Length = 1117

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 729 HKCYIYSISKLNSSLKWDQINI 794
           H+  ++ +SK+ S LKWDQ+++
Sbjct: 30  HQEVLFDLSKVGSDLKWDQVSL 51


>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
           morphology protein1, isoform b protein.
          Length = 1122

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 729 HKCYIYSISKLNSSLKWDQINI 794
           H+  ++ +SK+ S LKWDQ+++
Sbjct: 30  HQEVLFDLSKVGSDLKWDQVSL 51


>AF051403-2|AAC28323.1|  712|Caenorhabditis elegans fibulin-1
           isoform C precursor protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQLQS--CNGHP 314
           +C   + VC   + + K HS +  TN+IH  L    CN  P
Sbjct: 529 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNRCNRQP 569


>AF051402-1|AAC28322.1|  712|Caenorhabditis elegans fibulin-1
           isoform C precursor protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQLQS--CNGHP 314
           +C   + VC   + + K HS +  TN+IH  L    CN  P
Sbjct: 529 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNRCNRQP 569


>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
           tyrosine kinase protein.
          Length = 1122

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 729 HKCYIYSISKLNSSLKWDQINI 794
           H+  ++ +SK+ S LKWDQ+++
Sbjct: 30  HQEVLFDLSKVGSDLKWDQVSL 51


>AB212860-1|BAD98165.1|  712|Caenorhabditis elegans fibulin-1C
           protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQLQS--CNGHP 314
           +C   + VC   + + K HS +  TN+IH  L    CN  P
Sbjct: 529 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNRCNRQP 569


>Z68749-7|CAA92962.2|  728|Caenorhabditis elegans Hypothetical
           protein F56H11.1c protein.
          Length = 728

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQL---QSCNGHP-IKYCIT 332
           +C   + VC   + + K HS +  TN+IH  L   Q  +G+  IK C T
Sbjct: 568 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNQIADGYSCIKVCST 616


>Z68749-6|CAC35818.1|  689|Caenorhabditis elegans Hypothetical
           protein F56H11.1b protein.
          Length = 689

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQL---QSCNGHP-IKYCIT 332
           +C   + VC   + + K HS +  TN+IH  L   Q  +G+  IK C T
Sbjct: 529 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNQIADGYSCIKVCST 577


>Z68219-9|CAA92483.2|  728|Caenorhabditis elegans Hypothetical
           protein F56H11.1c protein.
          Length = 728

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQL---QSCNGHP-IKYCIT 332
           +C   + VC   + + K HS +  TN+IH  L   Q  +G+  IK C T
Sbjct: 568 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNQIADGYSCIKVCST 616


>Z68219-7|CAC35827.1|  689|Caenorhabditis elegans Hypothetical
           protein F56H11.1b protein.
          Length = 689

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQL---QSCNGHP-IKYCIT 332
           +C   + VC   + + K HS +  TN+IH  L   Q  +G+  IK C T
Sbjct: 529 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNQIADGYSCIKVCST 577


>AY851363-1|AAW34127.1|  728|Caenorhabditis elegans fibulin-1D
           splice variant protein.
          Length = 728

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQL---QSCNGHP-IKYCIT 332
           +C   + VC   + + K HS +  TN+IH  L   Q  +G+  IK C T
Sbjct: 568 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNQIADGYSCIKVCST 616


>AF070477-1|AAC24035.1|  589|Caenorhabditis elegans fibulin-1D
           precursor protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQL---QSCNGHP-IKYCIT 332
           +C   + VC   + + K HS +  TN+IH  L   Q  +G+  IK C T
Sbjct: 429 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNQIADGYSCIKVCST 477


>AF051403-1|AAC28324.1|  689|Caenorhabditis elegans fibulin-1
           isoform D precursor protein.
          Length = 689

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQL---QSCNGHP-IKYCIT 332
           +C   + VC   + + K HS +  TN+IH  L   Q  +G+  IK C T
Sbjct: 529 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNQIADGYSCIKVCST 577


>AF051401-1|AAC28321.1|  689|Caenorhabditis elegans fibulin-1
           isoform D precursor protein.
          Length = 689

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 198 KCTNREWVCNRMIQTIKYHSRNYYTNHIHSQL---QSCNGHP-IKYCIT 332
           +C   + VC   + + K HS +  TN+IH  L   Q  +G+  IK C T
Sbjct: 529 ECAGSDKVCVNTLGSFKCHSIDCPTNYIHDSLNKNQIADGYSCIKVCST 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,717,104
Number of Sequences: 27780
Number of extensions: 374250
Number of successful extensions: 625
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)