Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a15
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    29   0.55 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.0  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   5.2  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   6.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.8  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   9.0  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   9.0  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 544 FAHLHVKGFRSHLCLKRMIFTFISLRSWVYELHHVL 437
           + H++VK  +S  C+ +   + IS   W+ ELH +L
Sbjct: 441 YVHIYVKSSKSWRCMSQTHVSSISNLVWLNELHQLL 476


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 263 VYNTYLMPI*ESIFHNAEKVDDLSKTIAF 349
           +YN++++PI +S F+  E  D  ++T+ F
Sbjct: 431 LYNSFIIPILQSFFYITESSDLRNRTVYF 459


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 314  QHCGILILK*ALDKCYKPTVEKLIQNVL 231
            +HCGI I++  L   Y P  ++L+Q V+
Sbjct: 1056 EHCGIRIIEAELFHGYNPEKKELLQEVV 1083


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 110 KKLVSKIGHD*QFFLENTLHFQKMP 184
           KKL S +    Q  LEN LHF   P
Sbjct: 610 KKLASALASQDQLVLENALHFVNPP 634


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 173 QKMPPLS*YIHTLNCLMSILKHF 241
           +K PPL  Y ++ NCL  I KHF
Sbjct: 871 EKKPPL--YSYSKNCLECIQKHF 891


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -3

Query: 517 RSHLCLKRMIFTFI 476
           R +LC+KR+I+TFI
Sbjct: 88  RVNLCIKRLIYTFI 101


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 749 GLRRVLPRLSHSRKTTRYLTSSATLTKPQ 663
           GL+R   RL H  K+TRY+ ++A +   +
Sbjct: 26  GLKRFGCRLYHHSKSTRYIDATAKVVSQE 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,151
Number of Sequences: 5004
Number of extensions: 49265
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)