Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16a12
(848 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 274 8e-75
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 85 2e-17
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 30 0.36
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 28 1.9
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 28 1.9
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 27 2.5
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 27 4.4
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 27 4.4
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 26 5.9
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 26 5.9
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 26 7.8
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 274 bits (673), Expect = 8e-75
Identities = 126/212 (59%), Positives = 168/212 (79%), Gaps = 1/212 (0%)
Frame = -2
Query: 790 LLGIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGK 611
+ G+R +L+GPPG+GKGTQAP +++KY + HL+TGDMLR++V+ ++LG+ KK+MD+G
Sbjct: 1 MAGMRLILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGG 60
Query: 610 LVSDEMVVDMI-DKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIE 434
LVSD++V MI D+ L+ PECKNGF+LDGFPRTV QAEKL LL + K L+ V+E ++
Sbjct: 61 LVSDDIVTGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVD 120
Query: 433 DSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYH 254
D LLVRRITGRL+HP SGRSYH EF+PPK PM DDVTGE LI+RSDDN +AL+KRL TYH
Sbjct: 121 DELLVRRITGRLVHPGSGRSYHLEFNPPKVPMKDDVTGEPLIQRSDDNADALRKRLVTYH 180
Query: 253 AQTVPLVDYYMRKGLHWRVDASKAADDVFNKI 158
QT P+V++Y +KG VDA++ + V+ +I
Sbjct: 181 EQTTPVVEFYKKKGKWAAVDAAQKPEQVWEQI 212
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 84.6 bits (200), Expect = 2e-17
Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 4/205 (1%)
Frame = -2
Query: 769 LLGPPGSGKGTQAPRLKEKY-CVCHLSTGDMLRAEVS-SGSDLGRRLKKVMDEGKLVSDE 596
+LG PG+GKGTQ RL EK+ H+S GD LR E + GS G +K+ + +GK+V E
Sbjct: 7 VLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIVPME 66
Query: 595 MVVDMIDKNLDQPECK--NGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLL 422
+ + +++ + + K + FL+DGFPR + Q E + + K AL F +
Sbjct: 67 ITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFAL----YFRCGQETM 122
Query: 421 VRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTV 242
++R+ R SGRS DDN+E++KKR TY ++
Sbjct: 123 LKRLIHR--GKTSGRS-------------------------DDNIESIKKRFVTYTKASM 155
Query: 241 PLVDYYMRKGLHWRVDASKAADDVF 167
P+V+Y + +DA + D VF
Sbjct: 156 PVVEYLKSQNRLITIDAEQDPDAVF 180
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 30.3 bits (65), Expect = 0.36
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 733 APRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQP 557
+P L C S +MLR D G +K++ E + S ++D+++ QP
Sbjct: 183 SPNLLRVNAPCRKSLSEMLRELKDIEDDYGSNEEKILQEFESFSSSSSESLVDRDISQP 241
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/72 (25%), Positives = 28/72 (38%)
Frame = -2
Query: 784 GIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 605
G+R G P AP EK TGD+ +E+S+ + + +D G +
Sbjct: 171 GVRKSKAGAPSDPSSVHAPSSLEKPA----GTGDLPSSEISTKAPASTTVSSSVDPGTIN 226
Query: 604 SDEMVVDMIDKN 569
D + D N
Sbjct: 227 EDSSMKDHTTSN 238
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 27.9 bits (59), Expect = 1.9
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = -2
Query: 778 RAVLL-GPPGSGKGTQAPRL-KEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 605
R +L+ GPPG+GK A + E L G + ++++ S+ L+K +E +
Sbjct: 259 RGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESE--SNLRKAFEEAEKN 316
Query: 604 SDEMV-VDMIDKNLDQPECKNG 542
S ++ +D ID + E NG
Sbjct: 317 SPAIIFIDEIDSIAPKREKTNG 338
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 577 DKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVI-EFGIEDSLLVRRIT 407
++N +QP G GF R++PQ ++L ++ + L+ ++ + G D L + IT
Sbjct: 232 NENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAIT 289
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 4.4
Identities = 27/103 (26%), Positives = 47/103 (45%)
Frame = -2
Query: 736 QAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQP 557
+AP+L+EKY +C + T L + +G + VMDE + + ++ D L
Sbjct: 159 KAPKLREKYDMC-IGTPMRLVQAIQTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSAC 217
Query: 556 ECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 428
N F T+P ++++ LAK T I G++D+
Sbjct: 218 TSSN-ICKSLFSATIP--SRVEE-LAKVVTVDPIRIIVGLKDA 256
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 772 VLLGPPGSGKGTQAPRLKEK 713
V++GP GSGK T A + EK
Sbjct: 18 VVIGPAGSGKTTMAKAVSEK 37
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 800 DEDPFRNKGRATWPSWIR*GDSGSSSERKVLCLSPIHW*HAA 675
+ +P RN + + S++R + SSER + + +H H A
Sbjct: 611 ENEPMRNIAKRAFTSYVRAYATHLSSERSIFNMRDLHLGHIA 652
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 738 VPLPDPGGPSSTALIPKRILIRF*FRGCSGRCHII 842
VP+P P GP+ + PK + CSG+ HI+
Sbjct: 250 VPIPFPAGPTIIRMHPK-LSTTAVVCSCSGQFHIV 283
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 697 LSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV-VDMIDKNLDQPECKNGFLLDGFP 521
L TG ++ V + G K+ + K + ++ +++++ N+D PE N F
Sbjct: 211 LMTGKKIKGTVLIDAANGVGAAKIKELAKYIDPKLFPIEIVNDNIDNPELLNNSCGADFV 270
Query: 520 RT 515
RT
Sbjct: 271 RT 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,426,722
Number of Sequences: 5004
Number of extensions: 69713
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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