Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16a12
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0227 + 11934530-11934638,11937206-11937351,11937492-119376... 259 2e-69
12_01_0813 + 7475591-7475693,7476972-7477117,7477205-7477324,747... 252 3e-67
08_01_0066 - 455589-455687,455902-455976,456531-456677,457158-45... 148 5e-36
08_02_0034 - 11435678-11435702,11435787-11435816,11436364-114365... 132 3e-31
04_04_1543 - 34270578-34270718,34271069-34271341,34271782-342719... 112 3e-25
03_01_0215 + 1696250-1696573,1697653-1697793,1698267-1698539,169... 110 1e-24
07_03_1324 - 25825153-25825197,25825705-25825785,25825907-258259... 83 2e-23
04_01_0026 - 354855-354876,355184-355248,355710-355817,356215-35... 95 8e-20
06_01_0718 + 5233030-5233062,5233329-5233383,5233543-5233660,523... 81 8e-16
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104... 81 1e-15
06_01_0067 + 561910-561987,562698-562759,564293-564338,564701-56... 77 2e-14
02_05_0942 + 32970537-32970581,32971059-32971113,32971300-329714... 76 4e-14
12_02_0346 - 17776871-17781445 31 1.5
12_02_0343 - 17748882-17753396 31 1.5
10_07_0162 - 13713504-13714754,13716445-13716522 29 3.5
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592... 29 3.5
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076... 29 4.7
05_07_0268 + 28830373-28830435,28830632-28830736,28831055-28831975 29 6.2
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 28 8.2
05_07_0306 - 29108860-29109282,29109425-29110441 28 8.2
>11_03_0227 +
11934530-11934638,11937206-11937351,11937492-11937611,
11937731-11937898,11938534-11938623,11938920-11939018
Length = 243
Score = 259 bits (634), Expect = 2e-69
Identities = 115/210 (54%), Positives = 157/210 (74%)
Frame = -2
Query: 778 RAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSD 599
R +L+GPPGSGKGTQ+P +K++YC+CHL+TGDMLRA V++ + LG + K+ MD+G+LVSD
Sbjct: 32 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSD 91
Query: 598 EMVVDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLLV 419
++VV +ID+ + +P C+ GF+LDGFPRTV QA+KLD++L K+ T +D V+ F I+DS+L
Sbjct: 92 DLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLEKKGTKVDKVLNFAIDDSILE 151
Query: 418 RRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVP 239
RITGR IHP SGRSYH +F PPK P DDVTGE LI+R DD E LK RL +H QT P
Sbjct: 152 ERITGRWIHPSSGRSYHTKFAPPKVPGVDDVTGEPLIQRKDDTAEVLKSRLEAFHKQTEP 211
Query: 238 LVDYYMRKGLHWRVDASKAADDVFNKIDNI 149
++DYY +K L + A K +V ++ +
Sbjct: 212 VIDYYSKKALVANLHAEKPPKEVTAEVQKV 241
>12_01_0813 +
7475591-7475693,7476972-7477117,7477205-7477324,
7477445-7477612,7478252-7478341,7478941-7479039
Length = 241
Score = 252 bits (617), Expect = 3e-67
Identities = 111/203 (54%), Positives = 153/203 (75%)
Frame = -2
Query: 778 RAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSD 599
R +L+GPPG GKGTQ+P +K+++C+CHL+TGDMLRA V++ + LG + K+ MD+G+LVSD
Sbjct: 30 RVILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 89
Query: 598 EMVVDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLLV 419
++VV +ID+ + + C+ GF+LDGFPRTV QA+KLD++LAK+ T +D V+ F I+D++L
Sbjct: 90 DLVVGIIDEAMKKTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILE 149
Query: 418 RRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVP 239
RITGR IHP SGRSYH +F PPK P DDVTGE LI+R DD LK RL +H QT P
Sbjct: 150 ERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTKP 209
Query: 238 LVDYYMRKGLHWRVDASKAADDV 170
++DYY +KG+ + A K +V
Sbjct: 210 VIDYYTKKGIVANLHAEKPPKEV 232
>08_01_0066 -
455589-455687,455902-455976,456531-456677,457158-457292,
457380-457508,457719-457814,458212-458403
Length = 290
Score = 148 bits (359), Expect = 5e-36
Identities = 81/217 (37%), Positives = 128/217 (58%), Gaps = 1/217 (0%)
Frame = -2
Query: 781 IRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVS 602
++ ++ G P SGKGTQ +K KY + H+S GD+LRAE+++GS+ G+R K+ M++G+LV
Sbjct: 74 LKVMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 133
Query: 601 DEMVVDMIDKNLDQPEC-KNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSL 425
DE+VV+M+ + L QP+ + G+LLDG+PR+ QA L+ L + D I + D L
Sbjct: 134 DEIVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETLNIRP----DIFILLDVPDEL 189
Query: 424 LVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQT 245
LV R+ GR + P +G+ YH ++ PP+ ++ L +R DD E +K RL T++
Sbjct: 190 LVERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEKVKLRLQTHYQNV 245
Query: 244 VPLVDYYMRKGLHWRVDASKAADDVFNKIDNIFKSRI 134
L+ Y + + V DDVF +ID S +
Sbjct: 246 ESLLSIY--EDVIVEVKGDALVDDVFAEIDKQLTSSL 280
>08_02_0034 -
11435678-11435702,11435787-11435816,11436364-11436501,
11436646-11436755,11436838-11436867,11437948-11437993,
11438453-11438622,11439156-11439221,11439299-11439378,
11440704-11440842,11440933-11441013,11441112-11441147,
11441414-11441539,11442084-11442179,11443615-11443689,
11444288-11444434,11445155-11445229,11445485-11445619,
11445706-11445834,11446161-11446292,11446395-11446598
Length = 689
Score = 132 bits (319), Expect = 3e-31
Identities = 75/208 (36%), Positives = 117/208 (56%), Gaps = 22/208 (10%)
Frame = -2
Query: 781 IRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVS 602
++ ++ G P SGKGTQ + EKY + H+STGD+LRAEVSSG+++G++ K+ MD G LV
Sbjct: 90 LKVMISGAPASGKGTQCRMIVEKYGLVHISTGDLLRAEVSSGTEIGKKAKEYMDNGMLVP 149
Query: 601 DEMVVDMIDKNLDQPECK-NGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEF------ 443
D++V DM+ L QP+ + G+LLDG+PR+ QA+ L+ + + + IE
Sbjct: 150 DQVVTDMVVSRLSQPDVRERGWLLDGYPRSYAQAQSLESMKIRPDIFIVLEIELYNQFIK 209
Query: 442 ---------------GIEDSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALI 308
+ D +L+ R GR + P +G+ YH + PP+ D+V+ L+
Sbjct: 210 FLVHENITGYFNNVSTVPDDILIDRCVGRRLDPETGKIYHIKNFPPE---NDEVSAR-LV 265
Query: 307 KRSDDNVEALKKRLATYHAQTVPLVDYY 224
RSDD E +K RL TY + ++ Y
Sbjct: 266 TRSDDTFEKVKSRLDTYKQNSEAVIPTY 293
>04_04_1543 -
34270578-34270718,34271069-34271341,34271782-34271922,
34272365-34272667
Length = 285
Score = 112 bits (270), Expect = 3e-25
Identities = 69/205 (33%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Frame = -2
Query: 781 IRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVS 602
++ V LG PG GKGT A RL + V H++TGD++R ++S +L ++++ GKLVS
Sbjct: 54 VQWVFLGCPGVGKGTYASRLSQMLRVPHIATGDLVRDALASPGPFSEQLAEIVNNGKLVS 113
Query: 601 DEMVVDMIDKNLDQPECKN--GFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 428
DE++++++ K L++ K GF+LDGFPRT+ QAE L+ + T +D VI + +
Sbjct: 114 DEIIINLLSKRLEEGAEKGELGFILDGFPRTIRQAEILEGV-----TDIDLVINLKLREE 168
Query: 427 LLVRRITGRLIHPPSGRSYH-------------EEFHPPKKPMTDDVTGEALIKRSDDNV 287
L+ + GR + G +++ + PP P LI R DD
Sbjct: 169 ALLAKCLGRRMCSQCGGNFNVASIDMEGENGGPRMYMPPLLPPPQ--CESKLITRPDDTE 226
Query: 286 EALKKRLATYHAQTVPLVDYYMRKG 212
E +K+RL YH P+ D+Y +G
Sbjct: 227 EVVKERLRVYHDLCEPVEDFYRARG 251
>03_01_0215 +
1696250-1696573,1697653-1697793,1698267-1698539,
1698755-1698814,1698890-1699033
Length = 313
Score = 110 bits (265), Expect = 1e-24
Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 13/189 (6%)
Frame = -2
Query: 781 IRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVS 602
++ V LG PG GKGT A RL V H++TGD++R E++S L +L +++++GKLVS
Sbjct: 61 VQWVFLGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGKLVS 120
Query: 601 DEMVVDMIDKNLDQPE--CKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 428
DE++++++ K L + E ++GF+LDGFPRTV QAE LD + T +D V+ + +
Sbjct: 121 DEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGV-----TDIDMVVNLKLRED 175
Query: 427 LLVRRITGRLIHPPSGRSYH--------EEFHPP--KKP-MTDDVTGEALIKRSDDNVEA 281
+LV + GR I G++++ E PP P + + LI R+DD E
Sbjct: 176 VLVEKCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLITRADDTEEV 235
Query: 280 LKKRLATYH 254
++ RL Y+
Sbjct: 236 VRNRLQIYN 244
>07_03_1324 -
25825153-25825197,25825705-25825785,25825907-25825967,
25826005-25826060,25826171-25826239,25826366-25826473,
25826555-25826635,25826795-25826951,25827060-25827177,
25827285-25827339,25827779-25827814
Length = 288
Score = 83.4 bits (197), Expect(2) = 2e-23
Identities = 44/123 (35%), Positives = 71/123 (57%)
Frame = -2
Query: 769 LLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV 590
+LG PGSGKGTQ + E + HLS GD+LRAE+ SGS+ G ++ ++ EGK+V E+
Sbjct: 29 VLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSEVT 88
Query: 589 VDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLLVRRI 410
+ ++ + + E + FL+DGFPR +++ K + V+ F + + RR+
Sbjct: 89 IKLLQDAMIKNE-NDKFLIDGFPRNEENRAAFENV---TKISPAFVLFFDCSEEEMERRL 144
Query: 409 TGR 401
GR
Sbjct: 145 LGR 147
Score = 44.0 bits (99), Expect(2) = 2e-23
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = -2
Query: 304 RSDDNVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIF 146
R DDN+E ++KR + ++P++++Y K ++DA+K +VF + IF
Sbjct: 151 RVDDNIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVFEDVKAIF 203
>04_01_0026 -
354855-354876,355184-355248,355710-355817,356215-356295,
356729-356885,356990-357107,357485-357533,357806-357901
Length = 231
Score = 94.7 bits (225), Expect = 8e-20
Identities = 64/212 (30%), Positives = 107/212 (50%)
Frame = -2
Query: 775 AVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDE 596
A +LG PGSGKGTQ R+ + HLS GD+LR+E+S+G + G + ++ EGK+V E
Sbjct: 45 AFVLGGPGSGKGTQCVRIASDFGFAHLSAGDLLRSEISTGGEKGELILNIIKEGKIVPSE 104
Query: 595 MVVDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLLVR 416
+ V++I K ++ + K L+DGFPR + + T D VI F + +V+
Sbjct: 105 ITVELIRKAMESSDAKR-VLIDGFPRCEENRIAFERITG---TEPDLVIFFDCPEDEMVK 160
Query: 415 RITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPL 236
R+ GR GR + D++ E + KR L + + +P+
Sbjct: 161 RLLGR----NQGR------------VDDNI--ETIKKR-----------LKVFESLNIPV 191
Query: 235 VDYYMRKGLHWRVDASKAADDVFNKIDNIFKS 140
VDYY +G +++A+ +++F + +F S
Sbjct: 192 VDYYTSRGKVHKINATGTEEEIFGAVHKLFSS 223
>06_01_0718 +
5233030-5233062,5233329-5233383,5233543-5233660,
5233746-5233902,5234033-5234113,5234213-5234320,
5234448-5234483
Length = 195
Score = 81.4 bits (192), Expect = 8e-16
Identities = 54/187 (28%), Positives = 97/187 (51%)
Frame = -2
Query: 769 LLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV 590
+LG PGSGKGTQ + E + HLS G++LRAE++SGS+ G + ++ EGK+V E+
Sbjct: 28 VLGGPGSGKGTQCSNIVEHFGFIHLSAGELLRAEINSGSENGTMIDTIITEGKIVPSEIT 87
Query: 589 VDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLLVRRI 410
+ ++ + + + + +++DGFPR + +++ + + V+ F + + RR+
Sbjct: 88 IKLLQEAIIKGG-NDKYIIDGFPRNEENRVVFESVIS---ISPEFVLFFDCSEEEMERRL 143
Query: 409 TGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPLVD 230
GR GRS DD N+E ++KRL + ++P+++
Sbjct: 144 LGR----NQGRS-------------DD------------NIETIRKRLKVFVESSLPVIE 174
Query: 229 YYMRKGL 209
YY KG+
Sbjct: 175 YYESKGM 181
>08_01_0130 +
1040696-1041049,1042135-1042275,1042422-1042673,
1043797-1043904,1044289-1044593,1044720-1044841,
1044979-1045225,1045308-1045365,1045414-1045530,
1045718-1045753,1046492-1046554,1046958-1047047,
1047241-1047399,1047475-1047596,1048145-1048217,
1048307-1048375
Length = 771
Score = 81.0 bits (191), Expect = 1e-15
Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Frame = -2
Query: 784 GIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 605
G + V++G PG K A RL E V ++S G ++R E+S S L +++ ++EGKLV
Sbjct: 70 GPQWVVMGRPGPQKHAHAARLAEVLAVPYISMGTLVRQELSPASSLYKKIANSVNEGKLV 129
Query: 604 SDEMVVDMIDKNLDQPECK--NGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIED 431
++++ ++ K L++ K GF+LDG PRT QAE LD+++ +D V+ F D
Sbjct: 130 PEDIIFGLLTKRLEEGYNKGETGFILDGIPRTHMQAEILDEIV-----DIDLVLNFKCAD 184
Query: 430 SLLVRRITGRLIHPPSGRSY 371
+ ++R G I P G+ +
Sbjct: 185 NCFMKRRFGGDICPHCGQLF 204
>06_01_0067 +
561910-561987,562698-562759,564293-564338,564701-564758,
564892-565009,565130-565286,565611-565718,565884-565955,
566058-566174,566309-566404
Length = 303
Score = 77.0 bits (181), Expect = 2e-14
Identities = 35/84 (41%), Positives = 57/84 (67%)
Frame = -2
Query: 769 LLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV 590
++G PGSGKGTQ ++ +++ HLS GD+LR E ++ G +K +M+EGKLVS +++
Sbjct: 80 VIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGKLVSSDLI 139
Query: 589 VDMIDKNLDQPECKNGFLLDGFPR 518
V ++ K + + + FL+DGFPR
Sbjct: 140 VKLLFKAM-RESGNDKFLVDGFPR 162
Score = 51.6 bits (118), Expect = 8e-07
Identities = 19/55 (34%), Positives = 35/55 (63%)
Frame = -2
Query: 310 IKRSDDNVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIF 146
I R DDN++ +++R + QT+P++ YY ++G +VD ++ D+VF + IF
Sbjct: 173 IGRDDDNIDTIRRRFDVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFEDVKAIF 227
>02_05_0942 +
32970537-32970581,32971059-32971113,32971300-32971417,
32971567-32971615,32971637-32971723,32971890-32971970,
32972074-32972181,32972432-32972503,32973218-32973250
Length = 215
Score = 75.8 bits (178), Expect = 4e-14
Identities = 65/208 (31%), Positives = 100/208 (48%)
Frame = -2
Query: 769 LLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV 590
+LG PGSGKGTQ + E + HLS GD+LRAE+ SGS+ G ++ ++ EGK+V E
Sbjct: 32 VLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSEEA 91
Query: 589 VDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLLVRRI 410
MI D+ FL+DGFPR +++ K V+ F + + RR+
Sbjct: 92 --MIKSGNDK------FLIDGFPRNEENRAAFENV---TKITPAFVLFFDCSEEEMERRL 140
Query: 409 TGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPLVD 230
GR GR + D++ E + KR VE+ ++P+++
Sbjct: 141 LGR----NQGR------------VDDNI--ETIRKRFKVFVES-----------SLPVIE 171
Query: 229 YYMRKGLHWRVDASKAADDVFNKIDNIF 146
YY K ++DA+K +VF + IF
Sbjct: 172 YYNAKDKVKKIDAAKPIPEVFEDVKAIF 199
>12_02_0346 - 17776871-17781445
Length = 1524
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 134 FQQSTVCFVTLPVLKLTKCTNLI 66
FQQST+CF L +K+++C L+
Sbjct: 969 FQQSTICFPKLQKIKISECPKLL 991
>12_02_0343 - 17748882-17753396
Length = 1504
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 134 FQQSTVCFVTLPVLKLTKCTNLI 66
FQQST+CF L +K+++C L+
Sbjct: 970 FQQSTICFPKLQEIKISECPKLL 992
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 760 PPGSGKGTQAPRLKEKYCVCHLSTG 686
PPG+G +AP ++ C C L TG
Sbjct: 15 PPGAGVRVRAPLVESVSCYCRLDTG 39
>03_02_0147 -
5923117-5923215,5923882-5924069,5924885-5924977,
5925499-5925628,5925720-5925802,5925893-5925976,
5926253-5926316,5926375-5926515,5926801-5926863,
5926968-5927006,5927126-5927185,5927567-5927624,
5927708-5928099
Length = 497
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 673 HAACHQWIGDKHNTFLSDEEPE 738
HA QWI +K+NTF+S + E
Sbjct: 448 HAEARQWIDEKYNTFISKLQVE 469
>11_06_0211 +
21305535-21305895,21306512-21306761,21307543-21307652,
21308836-21309067,21310233-21310603,21311434-21311507,
21311727-21311880,21312251-21312434,21313066-21313291,
21313704-21314135,21314399-21314456,21314748-21314829,
21315350-21315421,21316594-21316737,21317379-21317457,
21318023-21318105,21318198-21318252,21318488-21318778
Length = 1085
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -2
Query: 361 FHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPLVDYYM 221
F ++ + D V AL K + DNV A+ L ++++ V L D+YM
Sbjct: 374 FAVTQRNLADYVVDLALEKGTTDNVAAVIVPLGSHYSSKVTLEDWYM 420
>05_07_0268 + 28830373-28830435,28830632-28830736,28831055-28831975
Length = 362
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 371 SRRVPPAEETND*RCHRRSFDKKVRRQCRGSEETLSYIS--CSNGSFSR 231
+R+ PP ND R D VRR+ R S L +IS CS + +R
Sbjct: 103 ARQAPPPAAANDAHQPRPKIDGSVRRRRRRSARALVHISIDCSGPTSAR 151
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 473 QDCTGRRNRVRNRGQSARK--ENYGQTDSPT 387
Q+CT RNR+R +K EN TD+PT
Sbjct: 1651 QECTEERNRIRVELDLVKKLLENMALTDNPT 1681
>05_07_0306 - 29108860-29109282,29109425-29110441
Length = 479
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -2
Query: 772 VLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEM 593
+L GPPG+GK + + D+ EV S SDL R L + + LV +++
Sbjct: 254 LLYGPPGTGKSSLIAAMAN---YLKFDIYDLELTEVKSNSDLRRLLVGMSNRSILVVEDI 310
Query: 592 VVDMIDKNLDQPECK 548
+ + D+ E K
Sbjct: 311 DCTIDLQQRDEGEIK 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,672,670
Number of Sequences: 37544
Number of extensions: 486821
Number of successful extensions: 1564
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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