Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a12
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   4.7  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   4.7  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   8.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   8.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   8.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.2  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 281 SEETLSYISCSNGSFSRLL 225
           +EET+ Y+   +G+FSRL+
Sbjct: 172 AEETVDYMLEKSGNFSRLV 190


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 425 QTVLDSELDYGVQCSLAL 478
           Q +LD  LDY + C L++
Sbjct: 56  QFILDVRLDYRISCLLSI 73


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 425 QTVLDSELDYGVQCSLAL 478
           Q +LD  LDY + C L++
Sbjct: 24  QFILDVRLDYRISCLLSI 41


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +2

Query: 368 VIATTTR-WVNQSARNSPYEQTVLD--SELDYGVQCSLALRQ*IVQLLSLG 511
           V+AT    W+   A +SP      D   EL+ G  C L  RQ  V   SLG
Sbjct: 153 VLATIAGVWILSGAISSPPLAGWNDWPEELEPGTPCQLTRRQGYVIYSSLG 203


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +2

Query: 368 VIATTTR-WVNQSARNSPYEQTVLD--SELDYGVQCSLALRQ*IVQLLSLG 511
           V+AT    W+   A +SP      D   EL+ G  C L  RQ  V   SLG
Sbjct: 153 VLATIAGVWILSGAISSPPLAGWNDWPEELEPGTPCQLTRRQGYVIYSSLG 203


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +2

Query: 368 VIATTTR-WVNQSARNSPYEQTVLD--SELDYGVQCSLALRQ*IVQLLSLG 511
           V+AT    W+   A +SP      D   EL+ G  C L  RQ  V   SLG
Sbjct: 153 VLATIAGVWILSGAISSPPLAGWNDWPEELEPGTPCQLTRRQGYVIYSSLG 203


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
 Frame = -2

Query: 601 DEMVVDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLL 422
           D   V+++D   D  E     + D       +   LDD +++      AVI   + D L+
Sbjct: 119 DVTTVELVDAT-DPGEHNGDTVTDVEAGLASRTNPLDDSISQANEGFCAVIS--MHDGLV 175

Query: 421 ------VRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLAT 260
                 +    G L     GRS+ +  HP  K    D     ++   ++  + +  R A+
Sbjct: 176 LYTTPSICTALGYLKDAWIGRSFIDYVHPKDKATLADQIKNGIVSPQEERPKGINGRRAS 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,778
Number of Sequences: 438
Number of extensions: 4639
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)