Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a09
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    30   0.33 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   4.0  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.4  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   9.4  

>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = -2

Query: 239 NCNKIFFIMPYNMSVCYVLVHLPTCRASPHTIN*SRALAVSHSSRCTHCNILYRFLKLMY 60
           N  K FFI+P   +VCY+ V L  C  +P  +  S  +     S     +I +  L  MY
Sbjct: 487 NVLKFFFIIPIAKNVCYLWVFL-YCPFTPFLVLFSNIVNGKEPS----TDIAFEDLNRMY 541

Query: 59  KSNRGIVK 36
             NR  VK
Sbjct: 542 SVNRFFVK 549


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 490 LLNRHFIISKNSIYVERYL*LFTKKTNMNLGKFNNAQVL*NNITNVIHTHS 338
           +L R  +I   S   ER L LFTK    ++   ++ Q + +N+  VIHT S
Sbjct: 597 VLRRMSVICSTS--TERSLMLFTKGAPESILAISSQQSIPSNVQEVIHTLS 645


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 335 FTMCMYYICYIILQNLSIVK 394
           FTM +YY+C ++L    ++K
Sbjct: 586 FTMFIYYLCILVLATYYVMK 605


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 92  YNEYIDWNARLLGLWTS-*SYVEKLCMSVGVLIHNRQTYY 208
           YNEY+D      G WT          ++VG+L++  Q +Y
Sbjct: 347 YNEYVDALENAGGFWTERWGDAPVHSLAVGLLLNRSQVHY 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,083
Number of Sequences: 5004
Number of extensions: 65923
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)