Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a09
         (789 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024243-1|ABC86305.1|  266|Drosophila melanogaster IP16043p pro...    29   9.6  
AE014296-1778|AAF50186.2|  231|Drosophila melanogaster CG6707-PB...    29   9.6  
AE014296-1777|AAN11940.1|  266|Drosophila melanogaster CG6707-PC...    29   9.6  
AE014296-1776|AAF50185.1|  266|Drosophila melanogaster CG6707-PA...    29   9.6  

>BT024243-1|ABC86305.1|  266|Drosophila melanogaster IP16043p
           protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 212 PYNMSVCYVLVHLPTCRASPHTIN*SRALAVSHSSRCTHCN 90
           PY  S     V + TCR   H I+ +      H  +CTHCN
Sbjct: 61  PYQQSTNTGGVPMVTCRVCQHMIDITTKRE-QHVVKCTHCN 100


>AE014296-1778|AAF50186.2|  231|Drosophila melanogaster CG6707-PB,
           isoform B protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 212 PYNMSVCYVLVHLPTCRASPHTIN*SRALAVSHSSRCTHCN 90
           PY  S     V + TCR   H I+ +      H  +CTHCN
Sbjct: 26  PYQQSTNTGGVPMVTCRVCQHMIDITTKRE-QHVVKCTHCN 65


>AE014296-1777|AAN11940.1|  266|Drosophila melanogaster CG6707-PC,
           isoform C protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 212 PYNMSVCYVLVHLPTCRASPHTIN*SRALAVSHSSRCTHCN 90
           PY  S     V + TCR   H I+ +      H  +CTHCN
Sbjct: 61  PYQQSTNTGGVPMVTCRVCQHMIDITTKRE-QHVVKCTHCN 100


>AE014296-1776|AAF50185.1|  266|Drosophila melanogaster CG6707-PA,
           isoform A protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 212 PYNMSVCYVLVHLPTCRASPHTIN*SRALAVSHSSRCTHCN 90
           PY  S     V + TCR   H I+ +      H  +CTHCN
Sbjct: 61  PYQQSTNTGGVPMVTCRVCQHMIDITTKRE-QHVVKCTHCN 100


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,122,302
Number of Sequences: 53049
Number of extensions: 652814
Number of successful extensions: 1141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)