Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a09
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-8|AAB37623.1|  630|Caenorhabditis elegans Exocyst compone...    29   2.9  
Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>U80437-8|AAB37623.1|  630|Caenorhabditis elegans Exocyst component
           protein 7 protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 526 IKTTIQKLLEYWYLLTAHRVIVTQHVCSL 612
           +  T    L +   LTAHRV VTQHV +L
Sbjct: 408 VHPTTASTLNFLSSLTAHRVTVTQHVLAL 436


>Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical
           protein Y26G10.1 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -2

Query: 233 NKIFFIMPYNMSVCYVLVHLPTCRASPHTIN 141
           N+IF+I P+   +CY++++    R +   ++
Sbjct: 617 NRIFYIFPFGSIICYIVLYFHVRRMTQQVLS 647


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,426,099
Number of Sequences: 27780
Number of extensions: 373629
Number of successful extensions: 762
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)