Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a08
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0036 + 5182345-5183511                                           29   4.7  
02_05_1187 + 34820577-34820757,34820930-34820961,34832101-348321...    29   6.2  

>03_02_0036 + 5182345-5183511
          Length = 388

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 355 QVVVAWKKILANILITTFSIVKICSV 432
           + + AW+++ + I  TTF+ V ICSV
Sbjct: 223 RAIKAWRRVSSIIFATTFAAVLICSV 248


>02_05_1187 +
           34820577-34820757,34820930-34820961,34832101-34832159,
           34832772-34833183
          Length = 227

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 301 WLWIYLRDLIARFDYGSSQVVVAWKKILANI 393
           W WI L D  +RF+ G+  + V W +I  NI
Sbjct: 81  WRWIPLADS-SRFEEGAELIDVCWMEIRCNI 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,963,572
Number of Sequences: 37544
Number of extensions: 317490
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)