Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a08
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical
           protein F28H7.6 protein.
          Length = 525

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 125 LNFWTQ*VTYSFSVSSL*LDNLMKFLYFKESSGYVRYTLRR 247
           LNFWT   T+ F V+ L L N+   L ++    Y+ +T  R
Sbjct: 99  LNFWTNFDTFKFGVNLLELKNVTLELVYQTELTYLYFTAFR 139


>AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical
           protein ZK355.5 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +3

Query: 21  YFLTGLNRILNIDSSDIQALDMKCNNLII 107
           YFLT LN I N+D+S I A+ ++ NN +I
Sbjct: 400 YFLTDLNYIGNLDAS-IPAVLIRSNNYLI 427


>Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical
           protein T05D4.3 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = +3

Query: 699 VIHMYF*IAPINALSKNSVGIDYRLIIIINHRYTNTAHLLQRHA 830
           +I   F ++PI+ LS +S+G    L+++ N+R  + ++ ++R A
Sbjct: 442 LIVFVFCVSPISTLSASSIGSTNSLLLLDNNRNPSGSNRVERTA 485


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,232,966
Number of Sequences: 27780
Number of extensions: 340374
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)