Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a03
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.4  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   3.3  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   5.8  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   5.8  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   7.6  

>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -1

Query: 389 KEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKEN 246
           K  E  E EWN+  N+     E A+E E T     Q Q+LL +  +EN
Sbjct: 85  KNKELIEEEWNDFQNEIGIIEENAVEQEIT----LQQQQLLAEKDEEN 128


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 383 VEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQ 261
           V+ T +  +E   QTV+ L  +IEG     W A  ++L+ +
Sbjct: 150 VDHTHDPSDESIKQTVQRLRSSIEGLDEAFWEAPQRQLICE 190


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 20/75 (26%), Positives = 29/75 (38%)
 Frame = -1

Query: 638 FARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSG 459
           F  P    P  VRL    +  +++    T  T     G      L S    +    YY  
Sbjct: 118 FCLPRPRSPPMVRLTLSSDAEYEYGFPSTHTTNAMATGFYSLFLLLSMSDSMSSISYYFL 177

Query: 458 LSLLVMVYVAHVKFG 414
           LS LV++Y+A +  G
Sbjct: 178 LS-LVLLYIASISLG 191


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 38  VRDAAVQGLLLLVRSDRLGHV 100
           +RDA+ Q LL+L +SD L +V
Sbjct: 108 IRDASHQALLILAKSDALDYV 128


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 683 RLVLCTRSVCSHLNAKXRATTL 748
           +L+LCTRS+ +HL+ +   +T+
Sbjct: 408 KLLLCTRSLLAHLDERAPVSTI 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,465
Number of Sequences: 5004
Number of extensions: 55262
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)