Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16a03
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0095 + 20833313-20835073 34 0.16
02_03_0107 - 15303890-15304060,15304158-15304248,15304505-153046... 31 0.86
11_04_0323 - 16380329-16380742 31 1.1
09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852 31 1.1
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 30 2.0
09_04_0197 - 15522167-15523524,15525416-15525683 30 2.6
07_01_0348 - 2517072-2517323,2517963-2518160 30 2.6
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601... 30 2.6
03_05_0521 + 25160245-25160883 29 3.5
05_01_0609 + 5443780-5443875,5444540-5445136,5448792-5448881,544... 29 4.6
01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819 29 4.6
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 29 6.1
05_07_0350 - 29457444-29457871,29458786-29461456 29 6.1
05_07_0195 - 28331445-28331641,28331841-28331934,28332019-283320... 29 6.1
10_07_0019 + 11931519-11932310 28 8.1
07_01_1113 - 10292781-10293299 28 8.1
07_01_0625 + 4674661-4674843,4676120-4676671,4676947-4677081 28 8.1
06_01_0178 + 1386981-1387505 28 8.1
05_01_0495 - 4136871-4136906,4137043-4137171,4137545-4137694,413... 28 8.1
02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357... 28 8.1
>09_06_0095 + 20833313-20835073
Length = 586
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = -1
Query: 278 QELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKHMXDWIVTQ 99
+EL +QA+KE +EAA + A +++ R Q K + +R +HM ++ + +
Sbjct: 324 RELKVQARKEAEKFWIEAAATAKKAQALQDLEERYKQQFIKPSYDREDISEHMQEYFLRE 383
Query: 98 R 96
R
Sbjct: 384 R 384
>02_03_0107 -
15303890-15304060,15304158-15304248,15304505-15304614,
15304715-15304784,15306365-15306558
Length = 211
Score = 31.5 bits (68), Expect = 0.86
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = -3
Query: 339 RESTGGXNRGREDGAVARAGTGAPHPGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAR 160
R+ST G + G DG + A A H G+ AAR + + R G A P R
Sbjct: 28 RQSTRGRSTGSGDGEESEALAAAVHAGKISREDAAARRMARTKQTARKSTGGKAPRKPLR 87
Query: 159 EVERGAPS 136
+ P+
Sbjct: 88 AIAAVMPA 95
>11_04_0323 - 16380329-16380742
Length = 137
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = -3
Query: 345 PNRESTGGXNRGREDG---AVARAGTGAPHPGQEGERXXAARGRLQGEAHVRXLRGEAAS 175
P+ +GG + GR G + R+G + G +G R R R GEA A
Sbjct: 29 PSSPRSGGGSAGRAGGGGGSAGRSGGSSARLGDKGRRRQGGRWRRLGEARRAGGSCSATR 88
Query: 174 GXPAREVERGAPS 136
EV+R PS
Sbjct: 89 DGADDEVQRHIPS 101
>09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852
Length = 506
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/99 (23%), Positives = 43/99 (43%)
Frame = -1
Query: 398 WLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAY 219
W+ +E N++ N VK + +G + EL +QA+KE +E A
Sbjct: 287 WVSQEQHC--NDYKVPDNLRVKFITAVFKGNS--RILDHKGELKVQARKEAEKFWIEEAA 342
Query: 218 RERLMYAYSEVKRRLXYQLEKSNVERRLAQKHMXDWIVT 102
E+ A +++ R Q K R+ +H+ ++ +T
Sbjct: 343 TEKKTQALQDMEERFKQQFIKLGYARKGIPEHIQEYYLT 381
>09_01_0076 +
1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -1
Query: 314 EGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLEKSNVERRL 135
E E+ QW+A ++ L+Q +KE + E R +L + +R L++ E +
Sbjct: 645 EAEQFRQWKATREKELLQLRKEGRRNEYE---RHKL----QALNQRQKLVLQRKTEEAAM 697
Query: 134 AQKHMXDWIVTQRDQG-DHSG 75
A K + + + ++ G D+SG
Sbjct: 698 ATKRLKELLEARKSSGRDNSG 718
>09_04_0197 - 15522167-15523524,15525416-15525683
Length = 541
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 397 GWTRKLKRPRTNGTKVXTKP 338
G++++L RPR+NGT + TKP
Sbjct: 416 GFSQRLTRPRSNGTYLSTKP 435
>07_01_0348 - 2517072-2517323,2517963-2518160
Length = 149
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 125 HMXDWIVTQRDQGDHSGPGEA 63
HM DWIV+ D H G GEA
Sbjct: 56 HMRDWIVSAMDAPAHDGVGEA 76
>02_05_0968 +
33156585-33156941,33158510-33159902,33160035-33160118,
33160216-33160265
Length = 627
Score = 29.9 bits (64), Expect = 2.6
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -3
Query: 339 RESTGGXNRGREDGAVARAGTGAPHPGQEGERXXA-ARGRLQGEAHVRXLRGEAASGXPA 163
R G RG +DGA AR G G +EG+ RGR + EA+ R R E
Sbjct: 16 RAERSGAPRGDDDGADARGGGGEEEEEEEGDGDGGDVRGR-RYEAYTRR-RDERLR---E 70
Query: 162 REVERGAPSRPEAHXR 115
RE R R EA R
Sbjct: 71 REGWRARMERKEAEVR 86
>03_05_0521 + 25160245-25160883
Length = 212
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/62 (35%), Positives = 23/62 (37%)
Frame = -3
Query: 327 GGXNRGREDGAVARAGTGAPHPGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAREVER 148
GG R G GA ER A G A VR R EAA+ ARE
Sbjct: 31 GGGGRAAAVAGAREPGKGAAVVAGARERVTAVAGAGAPAAGVRERRDEAAAVARAREPRE 90
Query: 147 GA 142
GA
Sbjct: 91 GA 92
>05_01_0609 +
5443780-5443875,5444540-5445136,5448792-5448881,
5449615-5450121
Length = 429
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = -3
Query: 309 REDGAVARAGTGAPHPGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAREVERGAPS 136
+E+ AV +GTG GE AAR G+ R L A S PA GAP+
Sbjct: 64 QEEVAVGDSGTGWGRRPARGEEDAAARDVAAGDVVARLL-PSAPSTWPAGAPSAGAPT 120
>01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819
Length = 266
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 362 WNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERL 207
W G T A+ E E+T++W A E +Q + ++E +Y+ +L
Sbjct: 28 WRHGAPPTYDAVNSLFEAERTQEWPAGSLEETVQNAIKT--WEMELSYKAKL 77
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -3
Query: 336 ESTGGXNRGREDGAVARAGTGAPHPGQEGERXXAARGRLQGEAHVRXLRGEAASGXPARE 157
ES G + R + A +R T P PG GER AA + + G++ P
Sbjct: 466 ESAGSDSPCRREEAKSR--TPRPQPGSAGERSAAASAEMSSRGGSKSCGGDSLQ--PGEA 521
Query: 156 VERG-APS 136
E G APS
Sbjct: 522 GEHGVAPS 529
>05_07_0350 - 29457444-29457871,29458786-29461456
Length = 1032
Score = 28.7 bits (61), Expect = 6.1
Identities = 25/70 (35%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = +1
Query: 586 GIKPSLTLPGSPLTGRAKVFWSCVATSEAEPRATSAVHAVCLL--APERKXTRDNIIYRI 759
G P T PGS GRA V W A A AV A ER+ R R
Sbjct: 637 GPAPGTTTPGSGGDGRAPVMWLAAALGLLACSVAFAAAAVATTRSAIERR-RRSGWQMRA 695
Query: 760 FYKLFPKCED 789
F K+ CED
Sbjct: 696 FQKVRFGCED 705
>05_07_0195 -
28331445-28331641,28331841-28331934,28332019-28332099,
28332186-28332234,28332334-28332419,28332513-28332740,
28332819-28332857,28332958-28333047,28333207-28333269,
28333371-28333449,28333539-28333585,28333668-28333730,
28333814-28333864,28333977-28334060,28334162-28334226,
28334559-28334676,28334775-28334825,28335228-28335314,
28335633-28335712,28336676-28336793
Length = 589
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 525 CGSGNIPVQQGNXCNGARILLRTVTAGH 442
CG + PV++GN CNGA + GH
Sbjct: 542 CGVVSSPVRRGNYCNGATKQQKLYQNGH 569
>10_07_0019 + 11931519-11932310
Length = 263
Score = 28.3 bits (60), Expect = 8.1
Identities = 28/70 (40%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = -3
Query: 315 RGREDG---AVARAGTGAPHPGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAREVERG 145
RGR G A RA G G E E A GR GE GEAA G PA E E+
Sbjct: 125 RGRVSGDFPAKRRADRGRGG-GCEAEGGDGATGRCSGE------EGEAAGGRPAPEREKE 177
Query: 144 APSRPEAHXR 115
R A R
Sbjct: 178 KAGRGGAATR 187
>07_01_1113 - 10292781-10293299
Length = 172
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -1
Query: 674 SASDVATHDQKTFARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLA 513
S+ D AT + PG +RL + + + H + GP+ G+GL+
Sbjct: 91 SSVDAATKGNPPRSARTTSAPGSLRLPEVAQRVVELLHHRHWWFGPWALGLGLS 144
>07_01_0625 + 4674661-4674843,4676120-4676671,4676947-4677081
Length = 289
Score = 28.3 bits (60), Expect = 8.1
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Frame = -3
Query: 345 PNRESTGGXNRGREDGAVARA-GTGAPHPGQEGERXXAARGRLQGEAHVRXLRGEAASGX 169
P +T G N R G + A G P PG A R R R +SG
Sbjct: 14 PKMPNTTGINPSRRAGGRSAAVGAAEPRPGGAAPLALATRLRRLQRRMARAAATATSSGN 73
Query: 168 PAREVERGAPSRPEAHXRLDSDA 100
A ++E A + R D DA
Sbjct: 74 KALDIEAAAAGDHQV-ARDDDDA 95
>06_01_0178 + 1386981-1387505
Length = 174
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = -3
Query: 327 GGXNRGREDGAVARAGTGAPHPGQEGERXXAARGRLQGEAHVRXLRGEAASG 172
GG +GR+ GA G G G G+ RG G G+ SG
Sbjct: 75 GGGGKGRKGGAGGHGGAGGGGGGGGGKGRKGGRGGDGGSGGAGGRGGDGGSG 126
>05_01_0495 -
4136871-4136906,4137043-4137171,4137545-4137694,
4137782-4137847,4138124-4138168,4139022-4139102,
4139202-4139283,4139571-4139642,4140473-4140573,
4140690-4140806,4140929-4141249
Length = 399
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 591 YS*RMVPILPLENWCDGS 538
Y+ RM PI+P+ENW GS
Sbjct: 213 YNPRMDPIIPVENWRKGS 230
>02_03_0109 -
15333228-15334793,15335255-15335392,15335496-15335771,
15336357-15336422,15338140-15338487
Length = 797
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 722 SGASKQTACTALVARGSASDVATHDQKTFAR 630
+ A K AC ALV+RG A+D + + AR
Sbjct: 630 AAAGKLEACRALVSRGGAADAGSETALSVAR 660
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,164,430
Number of Sequences: 37544
Number of extensions: 427985
Number of successful extensions: 1401
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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