Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16a03
(839 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X60221-1|CAA42782.1| 256|Homo sapiens H+-ATP synthase subunit b... 145 2e-34
BC016350-1|AAH16350.1| 256|Homo sapiens ATP synthase, H+ transp... 144 3e-34
BC005366-1|AAH05366.1| 256|Homo sapiens ATP synthase, H+ transp... 144 3e-34
AY871272-1|AAX11428.1| 256|Homo sapiens cell proliferation-indu... 144 3e-34
AL390195-7|CAC36042.1| 256|Homo sapiens ATP synthase, H+ transp... 144 3e-34
AK223018-1|BAD96738.1| 256|Homo sapiens ATP synthase, H+ transp... 144 3e-34
BC005960-1|AAH05960.1| 256|Homo sapiens ATP synthase, H+ transp... 140 4e-33
AL390195-8|CAI15628.1| 195|Homo sapiens ATP synthase, H+ transp... 107 7e-23
BC131805-1|AAI31806.1| 913|Homo sapiens CCDC46 protein protein. 35 0.42
K03179-1|AAA51847.1| 136|Homo sapiens COL1A1 protein. 33 1.7
AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250... 33 1.7
AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associ... 33 1.7
AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome assoc... 33 1.7
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 32 2.3
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 32 2.3
M11162-1|AAA75386.1| 138|Homo sapiens alpha-1 type I collagen p... 32 2.3
K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein. 32 2.3
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 32 2.3
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 32 2.3
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 32 2.3
AK131255-1|BAD18434.1| 957|Homo sapiens protein ( Homo sapiens ... 32 3.0
BC063607-1|AAH63607.1| 586|Homo sapiens ATAD3A protein protein. 31 3.9
BC033109-1|AAH33109.1| 586|Homo sapiens ATAD3A protein protein. 31 3.9
BC014101-1|AAH14101.1| 586|Homo sapiens ATAD3A protein protein. 31 3.9
BC011814-1|AAH11814.1| 586|Homo sapiens ATAD3A protein protein. 31 3.9
BC007803-1|AAH07803.1| 586|Homo sapiens ATAD3A protein protein. 31 3.9
AL645728-10|CAI22955.1| 586|Homo sapiens ATPase family, AAA dom... 31 3.9
AL645728-9|CAI22953.1| 571|Homo sapiens ATPase family, AAA doma... 31 3.9
AL157945-2|CAI22068.1| 648|Homo sapiens ATPase family, AAA doma... 31 3.9
AK001571-1|BAA91764.1| 586|Homo sapiens protein ( Homo sapiens ... 31 3.9
AF343078-1|AAK38647.1| 578|Homo sapiens TOB3 protein. 31 3.9
BC018701-1|AAH18701.1| 648|Homo sapiens ATPase family, AAA doma... 31 5.2
BC002542-1|AAH02542.1| 648|Homo sapiens ATPase family, AAA doma... 31 5.2
L47668-1|AAB59577.1| 84|Homo sapiens alpha-2 collagen type I p... 31 6.9
BC036669-1|AAH36669.1| 496|Homo sapiens COL25A1 protein protein. 31 6.9
AF293341-1|AAK35009.1| 642|Homo sapiens collagen-like Alzheimer... 31 6.9
AF293340-1|AAK35008.1| 654|Homo sapiens collagen-like Alzheimer... 31 6.9
AF035528-1|AAB94137.1| 496|Homo sapiens Smad6 protein. 31 6.9
BC039249-1|AAH39249.1| 301|Homo sapiens C10orf56 protein protein. 30 9.1
>X60221-1|CAA42782.1| 256|Homo sapiens H+-ATP synthase subunit b
protein.
Length = 256
Score = 145 bits (351), Expect = 2e-34
Identities = 87/220 (39%), Positives = 119/220 (54%), Gaps = 7/220 (3%)
Frame = -1
Query: 746 MLSRVXLRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 585
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 584 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGLSLL-VMVYVAHVKFGPK 408
EE+FQF + KTGVTGPY G GL Y SKE YV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLVLYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 407 LXAWLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLE 228
+ + DK E + E +++ ++ AI+ EK++Q Q + L ++ N+ LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 227 AAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKHMXDWI 108
YRERL Y EVK RL Y + N+ RR Q+HM +W+
Sbjct: 180 VTYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWV 219
>BC016350-1|AAH16350.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 144 bits (350), Expect = 3e-34
Identities = 87/220 (39%), Positives = 119/220 (54%), Gaps = 7/220 (3%)
Frame = -1
Query: 746 MLSRVXLRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 585
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 584 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGLSLL-VMVYVAHVKFGPK 408
EE+FQF + KTGVTGPY G GL Y SKE YV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 407 LXAWLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLE 228
+ + DK E + E +++ ++ AI+ EK++Q Q + L ++ N+ LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 227 AAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKHMXDWI 108
YRERL Y EVK RL Y + N+ RR Q+HM +W+
Sbjct: 180 VTYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWV 219
>BC005366-1|AAH05366.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 144 bits (350), Expect = 3e-34
Identities = 87/220 (39%), Positives = 119/220 (54%), Gaps = 7/220 (3%)
Frame = -1
Query: 746 MLSRVXLRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 585
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 584 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGLSLL-VMVYVAHVKFGPK 408
EE+FQF + KTGVTGPY G GL Y SKE YV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 407 LXAWLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLE 228
+ + DK E + E +++ ++ AI+ EK++Q Q + L ++ N+ LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 227 AAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKHMXDWI 108
YRERL Y EVK RL Y + N+ RR Q+HM +W+
Sbjct: 180 VTYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWV 219
>AY871272-1|AAX11428.1| 256|Homo sapiens cell
proliferation-inducing protein 47 protein.
Length = 256
Score = 144 bits (350), Expect = 3e-34
Identities = 87/220 (39%), Positives = 119/220 (54%), Gaps = 7/220 (3%)
Frame = -1
Query: 746 MLSRVXLRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 585
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 584 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGLSLL-VMVYVAHVKFGPK 408
EE+FQF + KTGVTGPY G GL Y SKE YV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 407 LXAWLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLE 228
+ + DK E + E +++ ++ AI+ EK++Q Q + L ++ N+ LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 227 AAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKHMXDWI 108
YRERL Y EVK RL Y + N+ RR Q+HM +W+
Sbjct: 180 VTYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWV 219
>AL390195-7|CAC36042.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 144 bits (350), Expect = 3e-34
Identities = 87/220 (39%), Positives = 119/220 (54%), Gaps = 7/220 (3%)
Frame = -1
Query: 746 MLSRVXLRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 585
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 584 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGLSLL-VMVYVAHVKFGPK 408
EE+FQF + KTGVTGPY G GL Y SKE YV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 407 LXAWLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLE 228
+ + DK E + E +++ ++ AI+ EK++Q Q + L ++ N+ LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 227 AAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKHMXDWI 108
YRERL Y EVK RL Y + N+ RR Q+HM +W+
Sbjct: 180 VTYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWV 219
>AK223018-1|BAD96738.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit b
isoform 1 pr protein.
Length = 256
Score = 144 bits (350), Expect = 3e-34
Identities = 87/220 (39%), Positives = 119/220 (54%), Gaps = 7/220 (3%)
Frame = -1
Query: 746 MLSRVXLRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 585
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 584 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGLSLL-VMVYVAHVKFGPK 408
EE+FQF + KTGVTGPY G GL Y SKE YV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 407 LXAWLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLE 228
+ + DK E + E +++ ++ AI+ EK++Q Q + L ++ N+ LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 227 AAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKHMXDWI 108
YRERL Y EVK RL Y + N+ RR Q+HM +W+
Sbjct: 180 VTYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWV 219
>BC005960-1|AAH05960.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 140 bits (340), Expect = 4e-33
Identities = 85/220 (38%), Positives = 118/220 (53%), Gaps = 7/220 (3%)
Frame = -1
Query: 746 MLSRVXLRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 585
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 584 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGLSLL-VMVYVAHVKFGPK 408
EE+FQF + KTGVTGPY G GL Y SK YV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKGIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 407 LXAWLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLE 228
+ + DK E + E +++ ++ AI+ EK++Q Q + L ++ N+ LE
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALE 179
Query: 227 AAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKHMXDWI 108
YRERL Y EV+ RL Y + N+ RR Q+HM +W+
Sbjct: 180 VTYRERLYRVYKEVRNRLDYHISVQNMMRRKEQEHMINWV 219
>AL390195-8|CAI15628.1| 195|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 195
Score = 107 bits (256), Expect = 7e-23
Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 1/152 (0%)
Frame = -1
Query: 560 SKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGLSLL-VMVYVAHVKFGPKLXAWLDKE 384
S GPY G GL Y SKE YV+ E ++ LS+L VMVY K+GP + + DK
Sbjct: 8 SAAATAGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIK-KYGPFVADFADKL 66
Query: 383 VEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLM 204
E + E +++ ++ AI+ EK++Q Q + L ++ N+ LE YRERL
Sbjct: 67 NEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLY 126
Query: 203 YAYSEVKRRLXYQLEKSNVERRLAQKHMXDWI 108
Y EVK RL Y + N+ RR Q+HM +W+
Sbjct: 127 RVYKEVKNRLDYHISVQNMMRRKEQEHMINWV 158
>BC131805-1|AAI31806.1| 913|Homo sapiens CCDC46 protein protein.
Length = 913
Score = 34.7 bits (76), Expect = 0.42
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -1
Query: 392 DKEVEATENEWNEGXNQTVKALEXAIEGEKTE-QWRAQGQELLIQAKKENVXXQLEAAYR 216
D ++EA N WN G + K +E EK + Q + I +K N +L+ YR
Sbjct: 201 DSDIEARLNSWNLGLDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYR 260
Query: 215 ERLMYAYSEVKRRLXYQLE 159
+ + E R+L +++
Sbjct: 261 SK-QHETEETIRKLEKKVQ 278
>K03179-1|AAA51847.1| 136|Homo sapiens COL1A1 protein.
Length = 136
Score = 32.7 bits (71), Expect = 1.7
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 279 TGAPHP-GQEGERXXAARGRLQGEAHVRXLRG-EAASGXPAREVERGAPSRPEA 124
TG P P GQ+G +G+A V G + A+G P + ERG P P A
Sbjct: 82 TGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKRGERGVPGPPGA 135
>AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250kDa
protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.7
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = -1
Query: 398 WLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLE 228
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associated
protein 1 protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.7
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = -1
Query: 398 WLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLE 228
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome associated
protein protein.
Length = 2442
Score = 32.7 bits (71), Expect = 1.7
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = -1
Query: 398 WLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLE 228
W K+ + E+E E ++T+ +L+ + + ++ AQG+ L+QA KEN+ Q+E
Sbjct: 1304 WEGKQ-NSLESELME-LHETMASLQSRLRRAELQRMEAQGERELLQAAKENLTAQVE 1358
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 32.3 bits (70), Expect = 2.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 279 TGAPHP-GQEGERXXAARGRLQGEAHVRXLRG-EAASGXPAREVERGAPSRPEA 124
TG P P GQ+G +G+A V G + A+G P + ERG P P A
Sbjct: 553 TGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 606
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 32.3 bits (70), Expect = 2.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 279 TGAPHP-GQEGERXXAARGRLQGEAHVRXLRG-EAASGXPAREVERGAPSRPEA 124
TG P P GQ+G +G+A V G + A+G P + ERG P P A
Sbjct: 553 TGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 606
>M11162-1|AAA75386.1| 138|Homo sapiens alpha-1 type I collagen
protein.
Length = 138
Score = 32.3 bits (70), Expect = 2.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 279 TGAPHP-GQEGERXXAARGRLQGEAHVRXLRG-EAASGXPAREVERGAPSRPEA 124
TG P P GQ+G +G+A V G + A+G P + ERG P P A
Sbjct: 66 TGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 119
>K01228-1|AAA51995.1| 1040|Homo sapiens COL1A1 protein.
Length = 1040
Score = 32.3 bits (70), Expect = 2.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 279 TGAPHP-GQEGERXXAARGRLQGEAHVRXLRG-EAASGXPAREVERGAPSRPEA 124
TG P P GQ+G +G+A V G + A+G P + ERG P P A
Sbjct: 129 TGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 182
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 32.3 bits (70), Expect = 2.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 279 TGAPHP-GQEGERXXAARGRLQGEAHVRXLRG-EAASGXPAREVERGAPSRPEA 124
TG P P GQ+G +G+A V G + A+G P + ERG P P A
Sbjct: 553 TGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 606
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 32.3 bits (70), Expect = 2.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 279 TGAPHP-GQEGERXXAARGRLQGEAHVRXLRG-EAASGXPAREVERGAPSRPEA 124
TG P P GQ+G +G+A V G + A+G P + ERG P P A
Sbjct: 550 TGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 603
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 32.3 bits (70), Expect = 2.3
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 279 TGAPHP-GQEGERXXAARGRLQGEAHVRXLRG-EAASGXPAREVERGAPSRPEA 124
TG P P GQ+G +G+A V G + A+G P + ERG P P A
Sbjct: 556 TGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 609
>AK131255-1|BAD18434.1| 957|Homo sapiens protein ( Homo sapiens
cDNA FLJ16186 fis, clone BRTHA2007060, moderately
similar to EUKARYOTIC TRANSLATION INITIATION FACTOR 3
SUBUNIT 10. ).
Length = 957
Score = 31.9 bits (69), Expect = 3.0
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = -1
Query: 314 EGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLEKSNVERRL 135
E EK Q A+ + L +AK+E +EAAY++RL V+ RL ++ E+
Sbjct: 676 EMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRL------VEERLLHEREQQQEVELS 729
Query: 134 AQKHMXD 114
Q+H D
Sbjct: 730 KQRHEGD 736
>BC063607-1|AAH63607.1| 586|Homo sapiens ATAD3A protein protein.
Length = 586
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 338 VKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE 159
+K E A+E K+EQ RAQ +E +E Q A Y+++L E + + L
Sbjct: 93 LKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLN 152
Query: 158 KSNVERR 138
+ N+ ++
Sbjct: 153 EENLRKQ 159
>BC033109-1|AAH33109.1| 586|Homo sapiens ATAD3A protein protein.
Length = 586
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 338 VKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE 159
+K E A+E K+EQ RAQ +E +E Q A Y+++L E + + L
Sbjct: 93 LKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLN 152
Query: 158 KSNVERR 138
+ N+ ++
Sbjct: 153 EENLRKQ 159
>BC014101-1|AAH14101.1| 586|Homo sapiens ATAD3A protein protein.
Length = 586
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 338 VKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE 159
+K E A+E K+EQ RAQ +E +E Q A Y+++L E + + L
Sbjct: 93 LKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLN 152
Query: 158 KSNVERR 138
+ N+ ++
Sbjct: 153 EENLRKQ 159
>BC011814-1|AAH11814.1| 586|Homo sapiens ATAD3A protein protein.
Length = 586
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 338 VKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE 159
+K E A+E K+EQ RAQ +E +E Q A Y+++L E + + L
Sbjct: 93 LKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLN 152
Query: 158 KSNVERR 138
+ N+ ++
Sbjct: 153 EENLRKQ 159
>BC007803-1|AAH07803.1| 586|Homo sapiens ATAD3A protein protein.
Length = 586
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 338 VKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE 159
+K E A+E K+EQ RAQ +E +E Q A Y+++L E + + L
Sbjct: 93 LKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLN 152
Query: 158 KSNVERR 138
+ N+ ++
Sbjct: 153 EENLRKQ 159
>AL645728-10|CAI22955.1| 586|Homo sapiens ATPase family, AAA domain
containing 3A protein.
Length = 586
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 338 VKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE 159
+K E A+E K+EQ RAQ +E +E Q A Y+++L E + + L
Sbjct: 93 LKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLN 152
Query: 158 KSNVERR 138
+ N+ ++
Sbjct: 153 EENLRKQ 159
>AL645728-9|CAI22953.1| 571|Homo sapiens ATPase family, AAA domain
containing 3A protein.
Length = 571
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 338 VKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE 159
+K E A+E K+EQ RAQ +E +E Q A Y+++L E + + L
Sbjct: 78 LKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLN 137
Query: 158 KSNVERR 138
+ N+ ++
Sbjct: 138 EENLRKQ 144
>AL157945-2|CAI22068.1| 648|Homo sapiens ATPase family, AAA domain
containing 3B protein.
Length = 648
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 338 VKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE 159
+K E A+E K+EQ RAQ +E +E Q A Y+++L E + + L
Sbjct: 93 LKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLN 152
Query: 158 KSNVERR 138
+ N+ ++
Sbjct: 153 EENLRKQ 159
>AK001571-1|BAA91764.1| 586|Homo sapiens protein ( Homo sapiens
cDNA FLJ10709 fis, clone NT2RP3000869. ).
Length = 586
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 338 VKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE 159
+K E A+E K+EQ RAQ +E +E Q A Y+++L E + + L
Sbjct: 93 LKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLN 152
Query: 158 KSNVERR 138
+ N+ ++
Sbjct: 153 EENLRKQ 159
>AF343078-1|AAK38647.1| 578|Homo sapiens TOB3 protein.
Length = 578
Score = 31.5 bits (68), Expect = 3.9
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 338 VKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE 159
+K E A+E K+EQ RAQ +E +E Q A Y+++L E + + L
Sbjct: 92 LKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQQLLN 151
Query: 158 KSNVERR 138
+ N+ ++
Sbjct: 152 EENLRKQ 158
>BC018701-1|AAH18701.1| 648|Homo sapiens ATPase family, AAA domain
containing 3B protein.
Length = 648
Score = 31.1 bits (67), Expect = 5.2
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 338 VKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE 159
+K E A+E K+EQ RAQ +E +E Q A Y+++L E + + L
Sbjct: 93 LKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQRLLN 152
Query: 158 KSNVERR 138
+ N+ ++
Sbjct: 153 EENLRKQ 159
>BC002542-1|AAH02542.1| 648|Homo sapiens ATPase family, AAA domain
containing 3B protein.
Length = 648
Score = 31.1 bits (67), Expect = 5.2
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 338 VKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE 159
+K E A+E K+EQ RAQ +E +E Q A Y+++L E + + L
Sbjct: 93 LKEYEAAVEQLKSEQIRAQAEERRKTLSEETRQHQARAQYQDKLARQRYEDQLKQQRLLN 152
Query: 158 KSNVERR 138
+ N+ ++
Sbjct: 153 EENLRKQ 159
>L47668-1|AAB59577.1| 84|Homo sapiens alpha-2 collagen type I
protein.
Length = 84
Score = 30.7 bits (66), Expect = 6.9
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -3
Query: 318 NRGREDGAVARAGTGAPHP-GQEGERXXAARGRLQGEAHVRXLRGEAASGXPA 163
N GR+ VA GAP P G G+R A G A R GE PA
Sbjct: 6 NPGRDGARVAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPA 58
>BC036669-1|AAH36669.1| 496|Homo sapiens COL25A1 protein protein.
Length = 496
Score = 30.7 bits (66), Expect = 6.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 300 GAVARAGTGAP--HPGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAREVERGAPSR 133
GAV + G P PG++GE+ A +G+ + G +A+G E G P +
Sbjct: 195 GAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQ 252
>AF293341-1|AAK35009.1| 642|Homo sapiens collagen-like Alzheimer
amyloid plaque component precursor type II protein.
Length = 642
Score = 30.7 bits (66), Expect = 6.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 300 GAVARAGTGAP--HPGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAREVERGAPSR 133
GAV + G P PG++GE+ A +G+ + G +A+G E G P +
Sbjct: 267 GAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQ 324
>AF293340-1|AAK35008.1| 654|Homo sapiens collagen-like Alzheimer
amyloid plaque component precursor type I protein.
Length = 654
Score = 30.7 bits (66), Expect = 6.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 300 GAVARAGTGAP--HPGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAREVERGAPSR 133
GAV + G P PG++GE+ A +G+ + G +A+G E G P +
Sbjct: 267 GAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQ 324
>AF035528-1|AAB94137.1| 496|Homo sapiens Smad6 protein.
Length = 496
Score = 30.7 bits (66), Expect = 6.9
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = -3
Query: 345 PNRES--TGGXNRGREDGAVARAGTGAPHPGQEGERXXAARGRLQGEAHVRXLRGEAASG 172
PNRE +GG G EDG++ AP +EG + R R G+ +
Sbjct: 20 PNREEGGSGGGGGGDEDGSLGSRAEPAPR-AREGGGCGRSEVRPVAPRRPRDAVGQRGAQ 78
Query: 171 XPAREVERGAPSRP 130
R G P RP
Sbjct: 79 GAGRRRRAGGPPRP 92
>BC039249-1|AAH39249.1| 301|Homo sapiens C10orf56 protein protein.
Length = 301
Score = 30.3 bits (65), Expect = 9.1
Identities = 23/74 (31%), Positives = 26/74 (35%)
Frame = -3
Query: 333 STGGXNRGREDGAVARAGTGAPHPGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAREV 154
S G RG AG+G PG R R GE + E A G E
Sbjct: 13 SARGAGRGAITVGAREAGSGHRLPGARPSAAEGGRERAAGEGPAPPPQNEPAVGH-RHER 71
Query: 153 ERGAPSRPEAHXRL 112
G P+RP A L
Sbjct: 72 RLGVPARPAAQLGL 85
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,899,893
Number of Sequences: 237096
Number of extensions: 2349929
Number of successful extensions: 12891
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 12498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12878
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -