Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt16a03
         (839 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011453-1|AAR99111.1|  243|Drosophila melanogaster RE36486p pro...   253   3e-67
AE014296-1726|AAF50212.1|  243|Drosophila melanogaster CG8189-PA...   253   3e-67
Y08967-1|CAA70164.1|  184|Drosophila melanogaster Fo-ATP synthas...   207   1e-53
BT004878-1|AAO45234.1|  159|Drosophila melanogaster GM13038p pro...   162   5e-40
AE014296-1727|AAN11955.1|  159|Drosophila melanogaster CG8189-PB...   162   5e-40
BT022311-1|AAY54727.1|  163|Drosophila melanogaster IP08241p pro...    54   2e-07
BT015306-1|AAT94534.1|  194|Drosophila melanogaster AT16129p pro...    54   2e-07
AE014296-2245|AAF49841.1|  152|Drosophila melanogaster CG17300-P...    54   2e-07
AJ437578-1|CAD26833.1|  221|Drosophila melanogaster putative glu...    32   1.1  
AE013599-2684|AAF57693.1|  221|Drosophila melanogaster CG17534-P...    32   1.1  
AY061312-1|AAL28860.1|  647|Drosophila melanogaster LD23155p pro...    29   6.0  
AE013599-3127|AAF46670.2|  647|Drosophila melanogaster CG4030-PA...    29   6.0  

>BT011453-1|AAR99111.1|  243|Drosophila melanogaster RE36486p
           protein.
          Length = 243

 Score =  253 bits (619), Expect = 3e-67
 Identities = 124/215 (57%), Positives = 148/215 (68%)
 Frame = -1

Query: 746 MLSRVXLRSGASKQTACTALVARGSASDVATHDQKTFARPVRGEPGKVRLGFIPEEWFQF 567
           M SR  L +     T      A  +A+     +++   RP    PGKVRLGF+PEEWFQF
Sbjct: 1   MFSRAALLTAQRPLTVAATRSAAAAAAPGGAIERRQ--RPEH--PGKVRLGFLPEEWFQF 56

Query: 566 FHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGLSLLVMVYVAHVKFGPKLXAWLDK 387
           F++KTGVTGPYTFGVGL TYLCSKE YVMEHEYYSGLSL +M  +A  K GP +  W D 
Sbjct: 57  FYNKTGVTGPYTFGVGLITYLCSKEIYVMEHEYYSGLSLGIMAIIAVKKLGPVIAKWADG 116

Query: 386 EVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERL 207
           E++  E+EW EG    +K L  AIE EK EQWRA G  LL++AKKEN+  QLEAA+RER 
Sbjct: 117 EIDKIESEWKEGREAELKVLSDAIEAEKKEQWRADGALLLMEAKKENIALQLEAAFRERA 176

Query: 206 MYAYSEVKRRLXYQLEKSNVERRLAQKHMXDWIVT 102
           M  YSEVKRRL YQ+E  +VERRL+QKHM +WI T
Sbjct: 177 MNVYSEVKRRLDYQVECRHVERRLSQKHMVNWITT 211



 Score = 33.5 bits (73), Expect = 0.37
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -2

Query: 100 NVTKAITPDQEKQALDRCIADLA 32
           NV  +I+P QEK+ L++CIADL+
Sbjct: 212 NVLASISPQQEKETLNKCIADLS 234


>AE014296-1726|AAF50212.1|  243|Drosophila melanogaster CG8189-PA,
           isoform A protein.
          Length = 243

 Score =  253 bits (619), Expect = 3e-67
 Identities = 124/215 (57%), Positives = 148/215 (68%)
 Frame = -1

Query: 746 MLSRVXLRSGASKQTACTALVARGSASDVATHDQKTFARPVRGEPGKVRLGFIPEEWFQF 567
           M SR  L +     T      A  +A+     +++   RP    PGKVRLGF+PEEWFQF
Sbjct: 1   MFSRAALLTAQRPLTVAATRSAAAAAAPGGAIERRQ--RPEH--PGKVRLGFLPEEWFQF 56

Query: 566 FHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGLSLLVMVYVAHVKFGPKLXAWLDK 387
           F++KTGVTGPYTFGVGL TYLCSKE YVMEHEYYSGLSL +M  +A  K GP +  W D 
Sbjct: 57  FYNKTGVTGPYTFGVGLITYLCSKEIYVMEHEYYSGLSLGIMAIIAVKKLGPVIAKWADG 116

Query: 386 EVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERL 207
           E++  E+EW EG    +K L  AIE EK EQWRA G  LL++AKKEN+  QLEAA+RER 
Sbjct: 117 EIDKIESEWKEGREAELKVLSDAIEAEKKEQWRADGALLLMEAKKENIALQLEAAFRERA 176

Query: 206 MYAYSEVKRRLXYQLEKSNVERRLAQKHMXDWIVT 102
           M  YSEVKRRL YQ+E  +VERRL+QKHM +WI T
Sbjct: 177 MNVYSEVKRRLDYQVECRHVERRLSQKHMVNWITT 211



 Score = 33.5 bits (73), Expect = 0.37
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -2

Query: 100 NVTKAITPDQEKQALDRCIADLA 32
           NV  +I+P QEK+ L++CIADL+
Sbjct: 212 NVLASISPQQEKETLNKCIADLS 234


>Y08967-1|CAA70164.1|  184|Drosophila melanogaster Fo-ATP synthase
           subunit b protein.
          Length = 184

 Score =  207 bits (506), Expect = 1e-53
 Identities = 97/152 (63%), Positives = 112/152 (73%)
 Frame = -1

Query: 557 KTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGLSLLVMVYVAHVKFGPKLXAWLDKEVE 378
           KTGVTGPYTFGVGL TYLCSKE YVMEHEYYSGLSL +M  +A  K GP +  W D E++
Sbjct: 1   KTGVTGPYTFGVGLITYLCSKEIYVMEHEYYSGLSLGIMAIIAVKKLGPVIAKWADGEID 60

Query: 377 ATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYA 198
             E+EW EG    +K L  AIE EK EQWRA G  LL++AKKEN+  QLEAA+RER M  
Sbjct: 61  KIESEWKEGREAELKVLSDAIEAEKKEQWRADGALLLMEAKKENIALQLEAAFRERAMNV 120

Query: 197 YSEVKRRLXYQLEKSNVERRLAQKHMXDWIVT 102
           YSEV R L YQ+E  +VERRL+QKHM +WI T
Sbjct: 121 YSEVNRPLDYQVECRHVERRLSQKHMVNWITT 152



 Score = 33.5 bits (73), Expect = 0.37
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -2

Query: 100 NVTKAITPDQEKQALDRCIADLA 32
           NV  +I+P QEK+ L++CIADL+
Sbjct: 153 NVLASISPQQEKETLNKCIADLS 175


>BT004878-1|AAO45234.1|  159|Drosophila melanogaster GM13038p
           protein.
          Length = 159

 Score =  162 bits (394), Expect = 5e-40
 Identities = 76/127 (59%), Positives = 91/127 (71%)
 Frame = -1

Query: 482 MEHEYYSGLSLLVMVYVAHVKFGPKLXAWLDKEVEATENEWNEGXNQTVKALEXAIEGEK 303
           MEHEYYSGLSL +M  +A  K GP +  W D E++  E+EW EG    +K L  AIE EK
Sbjct: 1   MEHEYYSGLSLGIMAIIAVKKLGPVIAKWADGEIDKIESEWKEGREAELKVLSDAIEAEK 60

Query: 302 TEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKH 123
            EQWRA G  LL++AKKEN+  QLEAA+RER M  YSEVKRRL YQ+E  +VERRL+QKH
Sbjct: 61  KEQWRADGALLLMEAKKENIALQLEAAFRERAMNVYSEVKRRLDYQVECRHVERRLSQKH 120

Query: 122 MXDWIVT 102
           M +WI T
Sbjct: 121 MVNWITT 127



 Score = 33.5 bits (73), Expect = 0.37
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -2

Query: 100 NVTKAITPDQEKQALDRCIADLA 32
           NV  +I+P QEK+ L++CIADL+
Sbjct: 128 NVLASISPQQEKETLNKCIADLS 150


>AE014296-1727|AAN11955.1|  159|Drosophila melanogaster CG8189-PB,
           isoform B protein.
          Length = 159

 Score =  162 bits (394), Expect = 5e-40
 Identities = 76/127 (59%), Positives = 91/127 (71%)
 Frame = -1

Query: 482 MEHEYYSGLSLLVMVYVAHVKFGPKLXAWLDKEVEATENEWNEGXNQTVKALEXAIEGEK 303
           MEHEYYSGLSL +M  +A  K GP +  W D E++  E+EW EG    +K L  AIE EK
Sbjct: 1   MEHEYYSGLSLGIMAIIAVKKLGPVIAKWADGEIDKIESEWKEGREAELKVLSDAIEAEK 60

Query: 302 TEQWRAQGQELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKH 123
            EQWRA G  LL++AKKEN+  QLEAA+RER M  YSEVKRRL YQ+E  +VERRL+QKH
Sbjct: 61  KEQWRADGALLLMEAKKENIALQLEAAFRERAMNVYSEVKRRLDYQVECRHVERRLSQKH 120

Query: 122 MXDWIVT 102
           M +WI T
Sbjct: 121 MVNWITT 127



 Score = 33.5 bits (73), Expect = 0.37
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -2

Query: 100 NVTKAITPDQEKQALDRCIADLA 32
           NV  +I+P QEK+ L++CIADL+
Sbjct: 128 NVLASISPQQEKETLNKCIADLS 150


>BT022311-1|AAY54727.1|  163|Drosophila melanogaster IP08241p
           protein.
          Length = 163

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
 Frame = -1

Query: 674 SASDVATHDQKTFAR-PVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCS 498
           ++    TH  +  +R P  G PGKVR GF  + W         V GP   GVGL  Y+CS
Sbjct: 25  TSRSATTHSAQGLSRLPGHGSPGKVRPGFPSDNW---------VKGP--MGVGLLAYICS 73

Query: 497 KEXYVMEHE-------------YYSGLSLLVMVYVAHVKFGPKLXAWLDKEVEATENEWN 357
            +   ++HE             Y SG+++ ++   A ++  P +  W D E+   E+E+ 
Sbjct: 74  GDCCAIKHEHSGLSLGIMEDGYYSSGITIGILTTFAVIRLLPAIVKWADSEIIKIESEYE 133

Query: 356 EGXNQTVKAL 327
           +     +K L
Sbjct: 134 KSRETKIKVL 143


>BT015306-1|AAT94534.1|  194|Drosophila melanogaster AT16129p
           protein.
          Length = 194

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
 Frame = -1

Query: 674 SASDVATHDQKTFAR-PVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCS 498
           ++    TH  +  +R P  G PGKVR GF  + W         V GP   GVGL  Y+CS
Sbjct: 56  TSRSATTHSAQGLSRLPGHGSPGKVRPGFPSDNW---------VKGP--MGVGLLAYICS 104

Query: 497 KEXYVMEHE-------------YYSGLSLLVMVYVAHVKFGPKLXAWLDKEVEATENEWN 357
            +   ++HE             Y SG+++ ++   A ++  P +  W D E+   E+E+ 
Sbjct: 105 GDCCAIKHEHSGLSLGIMEDGYYSSGITIGILTTFAVIRLLPAIVKWADSEIIKIESEYE 164

Query: 356 EGXNQTVKAL 327
           +     +K L
Sbjct: 165 KSRETKIKVL 174


>AE014296-2245|AAF49841.1|  152|Drosophila melanogaster CG17300-PA
           protein.
          Length = 152

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
 Frame = -1

Query: 674 SASDVATHDQKTFAR-PVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCS 498
           ++    TH  +  +R P  G PGKVR GF  + W         V GP   GVGL  Y+CS
Sbjct: 14  TSRSATTHSAQGLSRLPGHGSPGKVRPGFPSDNW---------VKGP--MGVGLLAYICS 62

Query: 497 KEXYVMEHE-------------YYSGLSLLVMVYVAHVKFGPKLXAWLDKEVEATENEWN 357
            +   ++HE             Y SG+++ ++   A ++  P +  W D E+   E+E+ 
Sbjct: 63  GDCCAIKHEHSGLSLGIMEDGYYSSGITIGILTTFAVIRLLPAIVKWADSEIIKIESEYE 122

Query: 356 EGXNQTVKAL 327
           +     +K L
Sbjct: 123 KSRETKIKVL 132


>AJ437578-1|CAD26833.1|  221|Drosophila melanogaster putative
           glutathione S-transferase protein.
          Length = 221

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 524 VGLATYLCSKEXYVMEHEYYSGLSLLVMVYVAHVKFGPKLXAWLDK 387
           +G   YLC     + ++   S +S LV +     K  PKL  WLD+
Sbjct: 146 IGNQAYLCGPVITIADYSVVSSVSSLVGLAAIDAKRYPKLNGWLDR 191


>AE013599-2684|AAF57693.1|  221|Drosophila melanogaster CG17534-PA
           protein.
          Length = 221

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 524 VGLATYLCSKEXYVMEHEYYSGLSLLVMVYVAHVKFGPKLXAWLDK 387
           +G   YLC     + ++   S +S LV +     K  PKL  WLD+
Sbjct: 146 IGNQAYLCGPVITIADYSVVSSVSSLVGLAAIDAKRYPKLNGWLDR 191


>AY061312-1|AAL28860.1|  647|Drosophila melanogaster LD23155p
           protein.
          Length = 647

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -1

Query: 278 QELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKHM 120
           QEL+++ + E +  ++ + Y  +   +  +  + L  QLE+SN ERR  ++ M
Sbjct: 401 QELILRQQSELIQARVSSEYERQKCTSTEDEIQILRAQLEESNNERRAYKRKM 453


>AE013599-3127|AAF46670.2|  647|Drosophila melanogaster CG4030-PA
           protein.
          Length = 647

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -1

Query: 278 QELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKHM 120
           QEL+++ + E +  ++ + Y  +   +  +  + L  QLE+SN ERR  ++ M
Sbjct: 401 QELILRQQSELIQARVSSEYERQKCTSTEDEIQILRAQLEESNNERRAYKRKM 453


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,222,292
Number of Sequences: 53049
Number of extensions: 694946
Number of successful extensions: 2093
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)