Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt16a03
(839 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53340-6|AAA96210.1| 305|Caenorhabditis elegans Atp synthase b ... 75 5e-14
Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical pr... 74 1e-13
U00036-15|AAK29857.1| 731|Caenorhabditis elegans Hypothetical p... 32 0.58
AF143148-1|AAD37914.1| 315|Caenorhabditis elegans R151.8B prote... 32 0.58
U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 29 4.1
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 29 4.1
Z70284-20|CAA94286.2| 543|Caenorhabditis elegans Hypothetical p... 29 5.4
Z70271-8|CAA94238.2| 543|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 29 5.4
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 29 5.4
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 29 5.4
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 29 5.4
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 29 5.4
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 28 7.2
AL023845-6|CAA19536.1| 168|Caenorhabditis elegans Hypothetical ... 28 7.2
Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical p... 28 9.5
Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical p... 28 9.5
Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical p... 28 9.5
Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical p... 28 9.5
Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical p... 28 9.5
AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor tyro... 28 9.5
AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor tyro... 28 9.5
>U53340-6|AAA96210.1| 305|Caenorhabditis elegans Atp synthase b
homolog protein 2 protein.
Length = 305
Score = 75.4 bits (177), Expect = 5e-14
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 4/186 (2%)
Frame = -1
Query: 635 ARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGL 456
ARP+ P K RL +P+ WF F TGV+GPY F GL +L +KE +V E + + +
Sbjct: 99 ARPMY--PPKSRLLMMPDSWFTPFQKVTGVSGPYLFFGGLFAFLVNKELWVFEEQGHMTV 156
Query: 455 SLLVMVYVAHVKFGPKLXAWLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQG- 279
++ + G K+ L + N + +G Q + L+ A+E +KT + +
Sbjct: 157 GWILFYLLVTRTAGYKIDQGLYNGYQERVN-FFKGLIQ--EDLKEAVEFKKTSAKQTESL 213
Query: 278 ---QELLIQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLEKSNVERRLAQKHMXDWI 108
+E A KE++ QLEA YR+ + +E+KRR+ Y E + R+ ++ + I
Sbjct: 214 NSIKESYPTALKESMALQLEATYRKNVQSVATELKRRIDYLKETEESKARVEREQLLKLI 273
Query: 107 VTQRDQ 90
++ D+
Sbjct: 274 NSEVDK 279
>Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical
protein F35G12.10 protein.
Length = 301
Score = 74.1 bits (174), Expect = 1e-13
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Frame = -1
Query: 614 PGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEYYSGLSLLVMVY 435
P K RL +P+ WF F TG +GPY F GL +L +KE +V E + + + ++
Sbjct: 102 PPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYL 161
Query: 434 VAHVKFGPKLXAWLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWR----AQGQELL 267
+ G K+ A L K+ + + +G Q + L+ A++ KT + A +E +
Sbjct: 162 LVSRTAGYKIDAGLYKDYQERVG-FFKGLIQ--EDLKEAVDFRKTSAAQTASFAALKEGM 218
Query: 266 IQAKKENVXXQLEAAYRERLMYAYSEVKRRLXYQLE----KSNVERRLAQKHMXDWIVTQ 99
+ K+++ QLEAAYR+ + +E+KRR+ Y E K+ ER K + D + Q
Sbjct: 219 PTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEYLKETEETKARFERDQLLKLINDSVEKQ 278
Query: 98 RDQGD 84
Q D
Sbjct: 279 VSQKD 283
>U00036-15|AAK29857.1| 731|Caenorhabditis elegans Hypothetical
protein R151.8 protein.
Length = 731
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 362 IRSRSLQLPCP-TKXPILVRISREPHTP*PAVTVRSNIRAPLHXFPCCTGMLPD 520
+R R LQ P P T + + +EP T T I P P CT +L D
Sbjct: 26 LRERPLQSPAPITSTSLTSGLDKEPQTSTDNTTTNGEILNPSSSEPTCTSVLSD 79
>AF143148-1|AAD37914.1| 315|Caenorhabditis elegans R151.8B protein
protein.
Length = 315
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 362 IRSRSLQLPCP-TKXPILVRISREPHTP*PAVTVRSNIRAPLHXFPCCTGMLPD 520
+R R LQ P P T + + +EP T T I P P CT +L D
Sbjct: 26 LRERPLQSPAPITSTSLTSGLDKEPQTSTDNTTTNGEILNPSSSEPTCTSVLSD 79
>U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical
protein C27D6.1 protein.
Length = 782
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = -1
Query: 389 KEVEATENEWNEGXNQTVKAL-EXAIEGEKT----EQWRAQGQELLIQAKK 252
KE+EA +W + + K L E +E +T E+W+ + QE+ IQ K+
Sbjct: 250 KEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQ 300
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/70 (30%), Positives = 28/70 (40%)
Frame = -3
Query: 339 RESTGGXNRGREDGAVARAGTGAPHPGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAR 160
RE TG + G G PG+ G+R G L G+ + ++GE PA
Sbjct: 243 REFTGSGSIVGPRGNPGEKGDKG-EPGEGGQRGYPGNGGLSGQPGLPGMKGEKGLSGPAG 301
Query: 159 EVERGAPSRP 130
RG RP
Sbjct: 302 --PRGKEGRP 309
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/70 (30%), Positives = 28/70 (40%)
Frame = -3
Query: 339 RESTGGXNRGREDGAVARAGTGAPHPGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAR 160
RE TG + G G PG+ G+R G L G+ + ++GE PA
Sbjct: 243 REFTGSGSIVGPRGNPGEKGDKG-EPGEGGQRGYPGNGGLSGQPGLPGMKGEKGLSGPAG 301
Query: 159 EVERGAPSRP 130
RG RP
Sbjct: 302 --PRGKEGRP 309
>Z70284-20|CAA94286.2| 543|Caenorhabditis elegans Hypothetical
protein W08D2.8 protein.
Length = 543
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 495 LAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 641
LAA+ C T +V+ V E E ++ K+ WL+P SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350
>Z70271-8|CAA94238.2| 543|Caenorhabditis elegans Hypothetical
protein W08D2.8 protein.
Length = 543
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 495 LAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 641
LAA+ C T +V+ V E E ++ K+ WL+P SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 264 PGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAREVERGAPSRP 130
PG+ G+R G L G+ + ++GE PA RG RP
Sbjct: 268 PGEGGQRGYPGNGGLSGQPGLPGMKGEKGLSGPAG--PRGKEGRP 310
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/90 (27%), Positives = 41/90 (45%)
Frame = -1
Query: 401 AWLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAA 222
A + ++ E + NE Q KAL+ E +Q A+ + + K + QLE A
Sbjct: 571 AEIKRDYELLQTRENEKSVQLKKALDERKENGAYQQSVAKATDAEWERKMQFYEKQLEHA 630
Query: 221 YRERLMYAYSEVKRRLXYQLEKSNVERRLA 132
ER E ++R + ++S V R+LA
Sbjct: 631 NDER----KREEQKRTAAEFDQSRVARKLA 656
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/90 (27%), Positives = 41/90 (45%)
Frame = -1
Query: 401 AWLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKENVXXQLEAA 222
A + ++ E + NE Q KAL+ E +Q A+ + + K + QLE A
Sbjct: 571 AEIKRDYELLQTRENEKSVQLKKALDERKENGAYQQSVAKATDAEWERKMQFYEKQLEHA 630
Query: 221 YRERLMYAYSEVKRRLXYQLEKSNVERRLA 132
ER E ++R + ++S V R+LA
Sbjct: 631 NDER----KREEQKRTAAEFDQSRVARKLA 656
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 264 PGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAREVERGAPSRP 130
PG+ G+R G L G+ + ++GE PA RG RP
Sbjct: 268 PGEGGQRGYPGNGGLSGQPGLPGMKGEKGLSGPAG--PRGKEGRP 310
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 264 PGQEGERXXAARGRLQGEAHVRXLRGEAASGXPAREVERGAPSRP 130
PG+ G+R G L G+ + ++GE PA RG RP
Sbjct: 304 PGEGGQRGYPGNGGLSGQPGLPGMKGEKGLSGPAG--PRGKEGRP 346
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
C14C10.5 protein.
Length = 1908
Score = 28.3 bits (60), Expect = 7.2
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
Frame = -1
Query: 584 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEXYVMEHEY--YSGLSLLVMVYVAHVKFGP 411
EEW F G YT+ L TY KE ++ Y +S + ++ KF
Sbjct: 1314 EEWDSFQFCSKQHWGIYTWPAKLITYAPLKEQTAIDRSYEQFSEVEKYIVDMFQDEKFMT 1373
Query: 410 KLXAWLDKEVEATENEWNEGXNQTVKALEXAIEGEKTEQWRAQGQELLIQAKKE 249
+L E++ + +N + L T +R Q E+L+ + KE
Sbjct: 1374 RLRELFSIEMKKEDEVFNAVHFSLFQGLFRCYGDVLTHAFRTQ-LEILLASSKE 1426
>AL023845-6|CAA19536.1| 168|Caenorhabditis elegans Hypothetical
protein Y51B9A.8 protein.
Length = 168
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 525 CGSGNIPVQQGNXCNGARILLRTVTAGHGVCG 430
C +GN V G+ C A+++ T+T G+ G
Sbjct: 36 CPAGNTEVSSGDCCPTAQVVNGTITCNGGLVG 67
>Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +3
Query: 462 GVIFVLHYIXFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNF 608
GV F L + CC+ KS +TRH + + A S +
Sbjct: 447 GVFFSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINSAANSAY 495
>Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +3
Query: 462 GVIFVLHYIXFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNF 608
GV F L + CC+ KS +TRH + + A S +
Sbjct: 473 GVFFSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINSAANSAY 521
>Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +3
Query: 462 GVIFVLHYIXFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNF 608
GV F L + CC+ KS +TRH + + A S +
Sbjct: 447 GVFFSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINSAANSAY 495
>Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +3
Query: 462 GVIFVLHYIXFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNF 608
GV F L + CC+ KS +TRH + + A S +
Sbjct: 473 GVFFSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINSAANSAY 521
>Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical
protein C01G6.8c protein.
Length = 769
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +3
Query: 462 GVIFVLHYIXFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNF 608
GV F L + CC+ KS +TRH + + A S +
Sbjct: 314 GVFFSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINSAANSAY 362
>AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 902
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +3
Query: 462 GVIFVLHYIXFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNF 608
GV F L + CC+ KS +TRH + + A S +
Sbjct: 447 GVFFSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINSAANSAY 495
>AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 928
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +3
Query: 462 GVIFVLHYIXFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNF 608
GV F L + CC+ KS +TRH + + A S +
Sbjct: 473 GVFFSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINSAANSAY 521
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,112,586
Number of Sequences: 27780
Number of extensions: 341816
Number of successful extensions: 1022
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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