Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15p24
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    46   5e-06
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    31   0.20 
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    27   2.5  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   4.4  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    27   4.4  
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac...    27   4.4  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    27   4.4  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   5.8  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   7.6  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   7.6  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   7.6  

>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
 Frame = -2

Query: 660 LDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQY 481
           LD   P     V + MGS +D    +  A    E  +  +L + SAH+ T + +    + 
Sbjct: 377 LDVKDPVESPVVGIIMGSDSDLSKMKDAAVILDEFKVPYELTIVSAHR-TPDRMVTYART 435

Query: 480 EDTHGALVFIAVAGRSNGLGPVLSGNTSYPVINCPPPSDKL--VQDIWSSLSVPSGLGCA 307
             + G  V IA AG +  L  +++  T  PVI  P     L  V  + S + +P G+  A
Sbjct: 436 AASRGLRVIIAGAGGAAHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGVPVA 495

Query: 306 TVIYPDS--AALMAAQII 259
           TV   +S  A ++A +I+
Sbjct: 496 TVAINNSQNAGILACRIL 513


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 23/72 (31%), Positives = 33/72 (45%)
 Frame = -2

Query: 714 TAADLDTVKRNFAWVKDQLDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLR 535
           T+A L T  R F     QLD     +      F G P  +E+C ++ K   ++G+D  L 
Sbjct: 62  TSAALFTDGRYFNQASQQLDENWTLMKQG---FTGVPTWEEYCTQMTKCNEKVGIDSSLI 118

Query: 534 VTSAHKATEETL 499
              A KA  E+L
Sbjct: 119 TFPAAKALRESL 130


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 577 YFLTMFLVGW*THKDDNFVVDRRLQEIKLVFHPSKVAFDCV*ISCSHRCEV 729
           YF   +L+ W  H   +  V  RL +  +  HP  V + C  +   +R  +
Sbjct: 189 YFALSWLITWFAHDVSDISVVCRLFDFFISSHPLTVVYTCAQVVLDNRTSI 239


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 420 PVLSGNTSYPVINCPPPSDKLVQDIWSSLSV 328
           P   G+   P  N PPP+   + D+ SS+S+
Sbjct: 583 PPFDGDVCPPACNTPPPNYDELFDVLSSISI 613


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -2

Query: 717 VTAADLDTVKRNFAWVKDQLDFLK-PTIHHKV---VVFMGSPADQEHCQKIAKAARELGL 550
           +  A LDT+ + + W K  L+ ++ P  HH++   +V++    + E    + +A  + G 
Sbjct: 536 IVTAVLDTIIKKYKWGKSLLESVESPRFHHQLMPNIVYIDETVEIE----VLRALEKFGH 591

Query: 549 DVDL 538
            VDL
Sbjct: 592 IVDL 595


>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
           Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 167

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 414 LSGNTSYPVINCPPPSDKLVQDIWSSLSVPSGLGCATVIYP 292
           LS    YP++   PP  K   +IW     P+G  C ++++P
Sbjct: 59  LSFPQDYPLM---PPKMKFTTEIWHPNVHPNGEVCISILHP 96


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 408 GNTSYPV-INCPPPSDKLVQDIWSSLSVP 325
           G   YP  ++ PPPS K  QD W++   P
Sbjct: 467 GREEYPRRLSNPPPSQKTNQDAWTNRKRP 495


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 813 LADVIDSDSWRLWP 772
           L  ++DSD+WR WP
Sbjct: 106 LKHLVDSDTWRRWP 119


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 438 RSNGLGPVLSGNTSYPVINCPPP--SDKLVQDIWSSLSV 328
           RS  + P++  +T   VI+CPP   SD+ +Q  W ++ +
Sbjct: 40  RSTPINPIIRSDTIQLVISCPPVTYSDE-IQVPWKAIDL 77


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 623 TTLWWIVGFKKSSWSFTQAKL 685
           TT  +I+ FKK+SW F + K+
Sbjct: 514 TTEEYIINFKKNSWLFFRKKI 534


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 625 NFVVDRRLQEIKLVFHPSKVAFDCV*ISC 711
           N +V   L + + VFH +K  FDC+  SC
Sbjct: 582 NVLVHMILTQFRDVFHLTKQRFDCLKNSC 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,641,274
Number of Sequences: 5004
Number of extensions: 80024
Number of successful extensions: 240
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)